PDBsum entry 1agf Go to PDB code:  Tunnel analysis for: 1agf calculated with MOLE 2.0 PDB id 1agf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.17 15.6 -1.16 -0.23 3.5 66 1 0 2 1 4 1 0   2 1.19 1.19 22.1 -1.14 -0.04 13.0 75 2 3 2 2 4 1 0   3 1.18 1.18 32.5 -1.43 -0.03 17.5 76 2 3 3 3 4 1 0   4 1.52 1.96 19.2 -1.92 -0.45 23.6 88 4 2 1 1 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.