PDBsum entry 1agd Go to PDB code:  Tunnel analysis for: 1agd calculated with MOLE 2.0 PDB id 1agd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.58 1.58 15.3 -1.28 -0.38 5.2 66 1 0 2 1 4 1 0   2 1.15 1.16 24.8 -0.51 -0.15 17.4 77 4 2 2 3 0 0 0   3 1.56 1.56 26.4 -1.47 -0.13 18.0 75 2 4 2 3 4 1 0   4 1.53 1.53 26.6 -1.41 -0.09 17.4 77 2 3 3 2 4 1 0   5 1.68 2.07 15.6 -2.69 -0.54 36.7 90 4 3 2 1 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.