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PDBsum entry 1abb

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Pore analysis for: 1abb calculated with MOLE 2.0 PDB id
1abb
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.99 4.09 33.5 -1.39 -0.19 29.1 79 6 4 0 2 1 1 0  
2 1.96 1.96 38.9 -0.49 -0.05 20.9 89 5 5 1 6 0 1 0  
3 3.03 4.11 41.1 -2.52 -0.56 30.4 82 5 5 1 0 1 1 0  
4 2.01 2.22 41.2 -1.58 -0.35 29.3 81 6 7 0 2 1 0 0  
5 2.07 2.14 47.6 -1.57 -0.30 28.6 79 7 6 1 3 1 0 0  
6 3.03 4.11 48.4 -3.07 -0.31 35.0 81 8 8 2 0 2 2 0  
7 3.26 3.88 56.6 -2.73 -0.27 34.0 79 10 8 1 0 2 2 0  
8 2.07 2.23 57.8 -2.68 -0.36 32.1 79 8 11 2 1 2 1 0  
9 2.97 4.09 57.9 -1.48 -0.39 24.8 80 6 6 1 2 2 1 0  
10 3.20 3.46 82.5 -1.78 -0.40 19.4 81 5 6 5 4 4 1 0  IMP 920 B
11 2.94 3.36 93.2 -1.85 -0.34 32.7 78 10 11 0 4 1 1 1  
12 2.72 3.05 98.0 -1.00 -0.23 24.9 75 11 10 0 6 2 0 1  
13 2.97 3.32 105.0 -1.98 -0.45 30.8 77 11 12 1 3 2 1 1  
14 2.06 2.20 113.4 -2.02 -0.50 31.4 77 11 14 2 4 2 0 1  
15 1.41 1.41 129.6 -2.24 -0.48 32.5 76 8 17 3 7 5 1 0  
16 2.72 3.36 159.1 -1.58 -0.27 25.1 82 15 16 5 4 4 2 0  
17 3.29 3.19 166.1 -1.47 -0.29 24.2 79 15 16 4 5 5 2 0  
18 1.48 1.48 206.0 -2.05 -0.42 29.8 80 13 23 5 6 5 2 1  
19 1.24 1.52 229.3 -1.59 -0.24 27.9 79 21 18 9 8 3 5 1  
20 1.20 1.45 245.0 -1.52 -0.27 23.3 80 17 13 10 11 2 6 1  SO4 900 D IMP 920 D
21 1.19 1.41 284.5 -1.74 -0.35 26.5 80 23 24 12 11 6 5 0  
22 1.27 1.59 318.7 -2.03 -0.42 29.6 80 21 30 12 12 6 5 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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