PDBsum entry 19hc

Tunnel analysis for: 19hc calculated with

MOLE 2.0

PDB id

19hc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

13 tunnels, coloured by tunnel radius

13 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.21

2.23

19.5

-1.10

0.02

22.0

75

4

2

1

2

1

1

1

HEM 307 A HEM 305 B

2

1.79

1.94

23.5

-0.47

-0.47

5.0

87

1

0

3

3

0

2

0

HEM 301 B HEM 305 B

3

1.62

2.04

31.5

-0.86

-0.21

14.7

81

4

1

2

5

0

1

0

HEM 305 B

4

1.40

3.75

32.3

-0.12

-0.04

14.3

81

4

2

1

7

1

1

2

HEM 303 B HEM 305 B

5

1.40

3.75

32.4

-0.04

-0.13

12.4

79

3

2

1

6

1

1

2

HEM 303 B HEM 305 B

6

1.45

3.66

32.8

0.58

0.28

11.2

71

3

0

0

4

1

1

4

HEM 301 B HEM 302 B HEM 303 B HEM 305 B

7

1.43

3.74

34.0

0.55

0.34

14.1

76

4

2

0

8

2

1

2

HEM 303 B HEM 305 B

8

1.46

1.78

36.5

0.33

0.03

9.0

82

3

1

2

4

1

1

3

HEM 301 B HEM 302 B HEM 305 B

9

1.41

3.70

36.9

0.37

0.26

14.1

74

6

1

0

7

2

1

2

HEM 303 B HEM 305 B

10

1.47

3.54

37.6

0.32

0.27

12.7

75

4

1

0

6

1

2

3

HEM 301 B HEM 302 B HEM 303 B HEM 305 B

11

1.61

1.96

39.5

-0.92

-0.16

15.5

83

4

1

2

7

1

2

0

HEM 306 A HEM 305 B

12

1.42

3.66

48.5

0.42

0.14

12.4

79

3

2

1

6

1

1

4

HEM 303 B HEM 305 B

13

1.43

1.53

67.7

0.02

0.19

12.2

79

6

0

3

13

2

2

3

HEM 306 A HEM 305 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.