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List of PDB entries containing Het Group XYS

Het Group: XYS
 
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Name: Alpha-D-Xylopyranose
Synonym(s): Alpha-D-Xylose; d-Xylose; xylose; xylopyranose
Formula: C5H10O5
Compound type: D-Saccharide, Alpha linking
CAS Registry Number: 25990-60-7
The following 148 PDB entries (on 2 separate pages) contain the Het Group XYS. The count column shows its number of occurrence in the structure.

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PDB id Count Name Method Date
1apv   ×0   Crystallographic analysis of transition state mimics bound to penicillopepsin: difluorostatine-and difluorostatone-containing peptides   X-ray(1.8Å)   31-Jan-94
1b3v   ×0   Xylanase from penicillium simplicissimum, complex with xylose   X-ray(2.4Å)   07-Apr-99
1b3w   ×0   Xylanase from penicillium simplicissimum, complex with xylobiose   X-ray(2.6Å)   07-Apr-99
1b3y   ×0   Xylanase from penicillium simplicissimum, complex with xylotetraose   X-ray(2.45Å)   06-Apr-99
1b3z   ×0   Xylanase from penicillium simplicissimum, complex with xylopentaose   X-ray(2.3Å)   06-Apr-99
1cpo   ×1   Chloroperoxidase   X-ray(1.9Å)   12-Feb-97
1f8q   ×0   Crystal structure of alpha-momorcharin in acetonitrile-water mixture   X-ray(2.2Å)   26-Jul-00
1gor   ×0   Thermostable xylanase i from thermoascus aurantiacus - xylobiose complex at 100 k   X-ray(1.7Å)   07-Dec-01
1h12   ×0   Structure of a cold-adapted family 8 xylanase   X-ray(1.2Å)   13-Mar-03
1h4h   ×3   Oligosaccharide-binding to family 11 xylanases: both covalent intermediate and mutant-product complexes display 2,5b conformations at the active-centre   X-ray(1.9Å)   09-May-02
1j10   ×0   Beta-amylase from bacillus cereus var. Mycoides in complex with ggx   X-ray(2.1Å)   17-Jun-03
1knn   ×0   Strepromyces lividans xylan binding domain cbm13 in complex with xylopentaose   X-ray(1.7Å)   19-Jun-02
1mn0   ×1   Crystal structure of galactose mutarotase from lactococcus lactis complexed with d-xylose   X-ray(1.9Å)   18-Sep-02
1ppl   ×0   Crystallographic analysis of transition-state mimics bound to penicillopepsin: phosphorus-containing peptide analogues   X-ray(1.7Å)   31-Oct-93
1qk0   ×0   Cel6a with a non-hydrolysable cellotetraose   X-ray(2.1Å)   18-Sep-99
1umz   ×2   Xyloglucan endotransglycosylase in complex with the xyloglucan nonasaccharide xllg.   X-ray(1.8Å)   18-Mar-04
1uqy   ×0   Xylanase xyn10b mutant (e262s) from cellvibrio mixtus in complex with xylopentaose   X-ray(1.72Å)   18-Dec-03
1uqz   ×0   Xylanase xyn10b mutant (e262s) from cellvibrio mixtus in complex with 4-o-methyl glucuronic acid   X-ray(1.55Å)   18-Dec-03
1ur1   ×0   Xylanase xyn10b mutant (e262s) from cellvibrio mixtus in complex with arabinofuranose alpha-1,3 linked to xylobiose   X-ray(1.43Å)   18-Dec-03
1ur2   ×0   Xylanase xyn10b mutant (e262s) from cellvibrio mixtus in complex with arabinofuranose alpha 1,3 linked to xylotriose   X-ray(1.6Å)   18-Dec-03
1v6u   ×0   Crystal structure of xylanase from streptomyces olivaceoviridis e-86 complexed with 2(2)-alpha-l-arabinofuranosyl-xylobiose   X-ray(2.1Å)   27-Apr-04
1vbr   ×1   Crystal structure of complex xylanase 10b from thermotoga maritima with xylobiose   X-ray(1.8Å)   28-Jun-05
1w9t   ×1   Structure of a beta-1,3-glucan binding cbm6 from bacillus halodurans in complex with xylobiose   X-ray(1.62Å)   03-Nov-04
2bfg   ×7   Crystal structure of beta-xylosidase (fam gh39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside   X-ray(2.4Å)   12-Oct-05
2bs6   ×2   Lectin from ralstonia solanacearum complexed with xyloglucan fragment   X-ray(1.8Å)   19-May-05
2c8n   ×5   The structure of a family 51 arabinofuranosidase, araf51, from clostridium thermocellum in complex with 1,3-linked arabinoside of xylobiose.   X-ray(2.9Å)   14-Dec-05
2cdc   ×5   Sulfolobus solfataricus glucose dehydrogenase 1 in complex with NADP and xylose   X-ray(1.5Å)   22-Mar-06
2cn3   ×9   Crystal structures of clostridium thermocellum xyloglucanase   X-ray(1.95Å)   22-May-06
2cnc   ×0   Family 10 xylanase   X-ray(2.4Å)   14-Jun-06
2d20   ×2   Crystal structure of michaelis complex of catalytic-site mutant xylanase from streptomyces olivaceoviridis e-86   X-ray(1.85Å)   10-Oct-06
2d22   ×2   Crystal structure of covalent glycosyl-enzyme intermediate of catalytic-site mutant xylanase from streptomyces olivaceoviridis e-86   X-ray(1.7Å)   10-Oct-06
2d23   ×2   Crystal structure of ep complex of catalytic-site mutant xylanase from streptomyces olivaceoviridis e-86   X-ray(1.95Å)   10-Oct-06
2d24   ×13   Crystal structure of es complex of catalytic-site mutant xylanase from streptomyces olivaceoviridis e-86   X-ray(1.85Å)   10-Oct-06
2d44   ×2   Crystal structure of arabinofuranosidase complexed with arabinofuranosyl-alpha-1,2-xylobiose   X-ray(2.3Å)   19-Sep-06
2dua   ×0   Crystal structure of phosphonopyruvate hydrolase complex with oxalate and mg++   X-ray(2Å)   03-Oct-06
2ebs   ×3   Crystal structure anaalysis of oligoxyloglucan reducing-end-specific cellobiohydrolase (oxg-rcbh) d465n mutant complexed with a xyloglucan heptasaccharide   X-ray(2.4Å)   26-Jun-07
2exj   ×6   Structure of the family43 beta-xylosidase d128g mutant from geobacillus stearothermophilus in complex with xylobiose   X-ray(2.2Å)   04-Apr-06
2exk   ×6   Structure of the family43 beta-xylosidase e187g from geobacillus stearothermophilus in complex with xylobiose   X-ray(2.2Å)   04-Apr-06
2fgl   ×6   An alkali thermostable f/10 xylanase from alkalophilic bacillus sp. Ng-27   X-ray(2.2Å)   26-Sep-06
2fuq   ×1   Crystal structure of heparinase ii   X-ray(2.15Å)   18-Apr-06
2g3j   ×2   Structure of s.Olivaceoviridis xylanase q88a/r275a mutant   X-ray(2.7Å)   06-Mar-07
2hcz   ×0   Crystal structure of expb1 (zea m 1), a beta-expansin and group-1 pollen allergen from maize   X-ray(2.75Å)   22-Aug-06
2hjp   ×0   Crystal structure of phosphonopyruvate hydrolase complex with phosphonopyruvate and mg++   X-ray(1.9Å)   03-Oct-06
2jen   ×2   Family 12 xyloglucanase from bacillus licheniformis in complex with ligand   X-ray(1.4Å)   20-Mar-07
2jeq   ×0   Family 5 xyloglucanase from paenibacillus pabuli in complex with ligand   X-ray(1.94Å)   20-Mar-07
2myr   ×1   Myrosinase, 2-deoxy-2-fluoro-glucosyl enzyme   X-ray(1.6Å)   16-Jun-97
2vh9   ×5   Crystal structure of nxg1-deltayniig in complex with xllg, a xyloglucan derived oligosaccharide   X-ray(2.1Å)   25-Nov-08
2xsp   ×0   Structure of cellobiohydrolase 1 (cel7a) from heterobasidion annosum   X-ray(1.7Å)   12-Oct-11
2y9i   ×2   Cbm62 in complex with xyloglucan oligosaccharide   X-ray(1.75Å)   23-Feb-11
2yfz   ×0   Cbm62 from clostridium thermocellum xyl5a   X-ray(1.8Å)   18-May-11
2yih   ×0   Structure of a paenibacillus polymyxa xyloglucanase from gh family 44 with xyloglucan   X-ray(1.7Å)   08-Jun-11
2ypj   ×0   Non-catalytic carbohydrate binding module cbm65b   X-ray(2.35Å)   19-Dec-12
3e80   ×2   Structure of heparinase ii complexed with heparan sulfate degradation disaccharide product   X-ray(2.35Å)   30-Dec-08
3rdk   ×1   Protein crystal structure of xylanase a1 of paenibacillus sp. Jdr-2   X-ray(1.49Å)   04-Apr-12
3ugh   ×0   Crystal structure of a 6-sst/6-sft from pachysandra terminalis in complex with 6-kestose   X-ray(2.9Å)   30-Nov-11
3vl9   ×1   Crystal structure of xeg-xyloglucan   X-ray(1.2Å)   18-Apr-12
3vsv   ×8   The complex structure of xylc with xylose   X-ray(1.48Å)   27-Feb-13
3w27   ×0   The high-resolution crystal structure of tsxyla, intracellular xylanase from /thermoanaerobacterium saccharolyticum jw/sl-ys485/: the complex of the e251a mutant with xylobiose   X-ray(1.41Å)   03-Apr-13
3w28   ×0   The high-resolution crystal structure of tsxyla, intracellular xylanase from /thermoanaerobacterium saccharolyticum jw/sl-ys485/: the complex of the e251a mutant with xylotriose   X-ray(1.39Å)   03-Apr-13
3w29   ×0   The high-resolution crystal structure of tsxyla, intracellular xylanase from /thermoanaerobacterium saccharolyticum jw/sl-ys485/: the complex of the e251a mutant with xylotetraose   X-ray(1.39Å)   03-Apr-13
3xis   ×0   A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 angstroms streptomyces rubiginosus structures with xylitol and d-xylose   X-ray(1.6Å)   15-Jul-92
3zmr   ×3   Bacteroides ovatus gh5 xyloglucanase in complex with a xxxg heptasaccharide   X-ray(1.43Å)   15-Jan-14
4bj0   ×0   Xyloglucan binding module (cbm4-2 x2-l110f) in complex with branched xyloses   X-ray(1Å)   23-Apr-14
4cuo   ×0   Banyan peroxidase with glycosylation   X-ray(1.67Å)   23-Jul-14
4fe7   ×0   Structure of xylose-binding transcription activator xylr   X-ray(2.9Å)   12-Dec-12
4g68   ×1   Biochemical and structural insights into xylan utilization by the thermophilic bacteriumcaldanaerobius polysaccharolyticus   X-ray(1.8Å)   22-Aug-12
4hkw   ×0   Crystal structures of mutant endo-beta-1,4-xylanase ii complexed with substrate and products   X-ray(1.65Å)   08-Jan-14
4w87   ×1   Crystal structure of xeg5a, a gh5 xyloglucan-specific endo-beta-1,4- glucanase from metagenomic library, in complex with a xyloglucan oligosaccharide   X-ray(2.15Å)   11-Mar-15
4w88   ×2   Crystal structure of xeg5a, a gh5 xyloglucan-specific endo-beta-1,4- glucanase from ruminal metagenomic library, in complex with a xyloglucan oligosaccharide and tris   X-ray(1.58Å)   11-Mar-15
4w8b   ×2   Crystal structure of xeg5b, a gh5 xyloglucan-specific beta-1,4- glucanase from ruminal metagenomic library, in complex with xxlg   X-ray(1.15Å)   11-Mar-15
4wm0   ×0   Crystal structure of mouse xyloside xylosyltransferase 1 complexed with acceptor ligand   X-ray(2.37Å)   30-Sep-15
4wma   ×0   Crystal structure of mouse xyloside xylosyltransferase 1 complexed with manganese,acceptor ligand and udp-glucose   X-ray(1.62Å)   30-Sep-15
4wmb   ×0   Crystal structure of mouse xyloside xylosyltransferase 1 complexed with manganese, acceptor ligand and udp   X-ray(2.05Å)   30-Sep-15
4wmi   ×0   Crystal structure of mouse xyloside xylosyltransferase 1 complexed with manganese, product ligand and udp (product complex i)   X-ray(1.87Å)   30-Sep-15
4wmk   ×0   Crystal structure of mouse xyloside xylosyltransferase 1 complexed with manganese, product ligand and udp (product complex ii)   X-ray(2.08Å)   30-Sep-15
4wn2   ×0   Crystal structure of mouse xyloside xylosyltransferase 1 complexed with manganese, product ligand and udp (product complex iii)   X-ray(1.95Å)   30-Sep-15
4wnh   ×0   Crystal structure of mouse xyloside xylosyltransferase 1 complexed with manganese,acceptor ligand and udp-xylose   X-ray(1.95Å)   30-Sep-15
4xis   ×0   A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 angstroms streptomyces rubiginosus structures with xylitol and d-xylose   X-ray(1.6Å)   15-Jul-92
4ylq   ×0   Crystal structure of a fviia-trypsin chimera (ft) in complex with soluble tissue factor   X-ray(1.4Å)   30-Dec-15
5a03   ×1   Crystal structure of aldose-aldose oxidoreductase from caulobacter crescentus complexed with xylose   X-ray(1.85Å)   21-Oct-15
5a6m   ×0   Determining the specificities of the catalytic site from the very high resolution structure of the thermostable glucuronoxylan endo-beta-1, 4-xylanase, ctxyn30a, from clostridium thermocellum with a xylotetraose bound   X-ray(1.17Å)   19-Oct-16
5afe   ×0   Medium resolution structure of thE C-terminal family 65 carbohydrate binding module (cbm65b) of endoglucanase cel5a from eubacterium cellulosolvens with a bound xyloglucan heptasaccharide (xxxg)   X-ray(2.6Å)   04-Feb-15
5d9m   ×6   Crystal structure of pbgh5a, a glycoside hydrolase family 5 enzyme from prevotella bryantii b14, e280a mutant in complex with the xyloglucan tetradecasaccharide xxxgxxxg   X-ray(1.9Å)   04-Nov-15
5d9n   ×3   Crystal structure of pbgh5a, a glycoside hydrolase family 5 member from prevotella bryantii b14, in complex with the xyloglucan heptasaccharide xxxg   X-ray(1.86Å)   04-Nov-15
5d9p   ×9   Crystal structure of pbgh5a, a glycoside hydrolase family 5 enzyme from prevotella bryantii b14, in complex with an inhibitory n- bromoacetylglycosylamine derivative of xxxg   X-ray(1.8Å)   04-Nov-15
5dpn   ×0   Engineered cbm x-2 l110f in complex with branched carbohydrate xxxg.   X-ray(1.6Å)   28-Oct-15
5dzg   ×3   Crystal structure of the catalytic nucleophile mutant of vveg16 in complex with a xyloglucan tetradecasaccharide   X-ray(1.79Å)   21-Sep-16
5e76   ×0   Crystal structure of bacova_02651 with xylogluco-oligosaccharide   X-ray(2.3Å)   11-May-16
5e7g   ×0   Crystal structure of bacova_02650 with xylogluco-oligosaccharide   X-ray(2.37Å)   04-May-16
5fks   ×3   Unraveling the first step of xyloglucan degradation by the soil saprophyte cellvibrio japonicus through the functional and structural characterization of a potent gh74 endo-xyloglucanase   X-ray(1.99Å)   25-Nov-15
5gln   ×1   Crystal structure of coxyl43, gh43 beta-xylosidase/alpha- arabinofuranosidase from a compostmicrobial metagenome in complex with xylotriose, calcium-bound form   X-ray(1.7Å)   15-Mar-17
5gqd   ×1   Crystal structure of covalent glycosyl-enzyme intermediate of xylanase mutant (t82a, n127s, and e128h) from streptomyces olivaceoviridis e- 86   X-ray(1.8Å)   09-Aug-17
5ik5   ×0   Laminin a2lg45 c-form, g6/7 bound.   X-ray(1.39Å)   10-Aug-16
5ik8   ×0   Laminin a2lg45 i-form, g6/7 bound.   X-ray(2Å)   10-Aug-16
5koe   ×0   The structure of arabidopsis thaliana fut1 in complex with xxlg   X-ray(1.79Å)   28-Sep-16
5kor   ×3   Arabidopsis thaliana fucosyltransferase 1 (fut1) in complex with gdp and a xylo-oligossacharide   X-ray(2.2Å)   12-Oct-16
5l6g   ×0   Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylose   X-ray(1.79Å)   21-Sep-16
5la2   ×1   The mechanism by which arabinoxylanases can recognise highly decorated xylans   X-ray(1.65Å)   31-Aug-16
5nh7   ×7   Crystal structure of xylose isomerase from piromyces e2 in complex with two mg2+ ions and xylose   X-ray(1.9Å)   01-Nov-17
5nhd   ×4   Crystal structure of xylose isomerase from piromyces e2 in complex with 2 ni2+ ions and xylose   X-ray(1.8Å)   01-Nov-17

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