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List of PDB entries containing Het Group UDP

Het Group: UDP
 
PDB code:
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Name: Uridine-5'-Diphosphate
Formula: C9H14N2O12P2
Compound type: Rna linking
CAS Registry Number: 58-98-0
The following 656 PDB entries (on 7 separate pages) contain the Het Group UDP. The count column shows its number of occurrence in the structure.

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PDB id Count Name Method Date
1bgu   ×0   Crystal structure of the DNA modifying enzyme beta-glucosyltransferase in the presence and absence of the substrate uridine diphosphoglucose   X-ray(2.2Å)   15-Oct-94
1c3j   ×0   T4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism   X-ray(1.88Å)   09-Aug-99
1f6d   ×3   The structure of udp-n-acetylglucosamine 2-epimerase from e. Coli.   X-ray(2.5Å)   13-Dec-00
1f7p   ×1   Crystal structures of feline immunodeficiency virus dutp pyrophosphatase and its nucleotide complexes in three crystal forms.   X-ray(2.3Å)   06-Sep-00
1f7r   ×0   Crystal structures of feline immunodeficiency virus dutp pyrophosphatase and its nucleotide complexes in three crystal forms.   X-ray(2.5Å)   06-Sep-00
1fgg   ×1   Crystal structure of 1,3-glucuronyltransferase i (glcat-i) complexed with gal-gal-xyl, udp, and mn2+   X-ray(2.3Å)   31-Jan-01
1gwv   ×1   Alpha-,1,3 galactosyltransferase - lactose complex   X-ray(2.5Å)   20-Mar-03
1gww   ×1   Alpha-,1,3 galactosyltransferase - alpha-d-glucose complex   X-ray(1.8Å)   20-Mar-03
1gx0   ×1   Alpha-,1,3 galactosyltransferase - beta-d-galactose complex   X-ray(1.8Å)   20-Mar-03
1gx4   ×1   Alpha-,1,3 galactosyltransferase - n-acetyl lactosamine complex   X-ray(1.46Å)   27-Mar-03
1gy8   ×3   Trypanosoma brucei udp-galactose 4' epimerase   X-ray(2Å)   22-May-03
1gz5   ×3   Trehalose-6-phosphate synthase. Otsa   X-ray(2.43Å)   07-Feb-03
1hxp   ×0   Nucleotide transferase   X-ray(1.8Å)   08-Nov-96
1ixy   ×1   Ternary complex of t4 phage bgt with udp and a 13 mer DNA duplex   X-ray(2.5Å)   04-Dec-02
1j8x   ×1   Crystal structure of lactose synthase, complex with udp and mn   X-ray(2Å)   23-Nov-01
1j94   ×1   Crystal structure of lactose synthase, complex with udp   X-ray(2.5Å)   23-Nov-01
1jg6   ×0   T4 phage bgt in complex with udp   X-ray(1.9Å)   15-Aug-01
1jg7   ×0   T4 phage bgt in complex with udp and mn2+   X-ray(1.65Å)   15-Aug-01
1jiu   ×0   T4 phage bgt in complex with mg2+ : form i   X-ray(2.5Å)   15-Aug-01
1jiv   ×0   T4 phage bgt in complex with mg2+ : form ii   X-ray(2.07Å)   15-Aug-01
1jix   ×0   T4 phage bgt in complex with ca2+   X-ray(1.65Å)   15-Aug-01
1k4v   ×1   1.53 a crystal structure of the beta-galactoside-alpha-1,3- galactosyltransferase in complex with udp   X-ray(1.53Å)   10-Apr-02
1kvr   ×0   Udp-galactose 4-epimerase complexed with udp-phenol   X-ray(1.9Å)   18-Mar-98
1lzi   ×0   Glycosyltransferase a + udp + h antigen acceptor   X-ray(1.35Å)   28-Aug-02
1lzj   ×0   Glycosyltransferase b + udp + h antigen acceptor   X-ray(1.32Å)   28-Aug-02
1m5r   ×1   Ternary complex of t4 phage bgt with udp and a 13 mer DNA duplex   X-ray(1.8Å)   11-Dec-02
1nah   ×0   Udp-galactose 4-epimerase from escherichia coli, reduced   X-ray(1.8Å)   23-Dec-96
1nai   ×0   Udp-galactose 4-epimerase from escherichia coli, oxidized   X-ray(2Å)   23-Dec-96
1nhe   ×1   Crystal structure of lactose synthase complex with udp   X-ray(2.5Å)   07-Jan-03
1nkh   ×3   Crystal structure of lactose synthase complex with udp and manganese   X-ray(2Å)   14-Jan-03
1nt7   ×1   Crystal structure of lactose synthase in the presence of udp-glucose   X-ray(2.32Å)   18-Feb-03
1nvk   ×0   T4 phage bgt in complex with udp and a mn2+ ion at 1.8 a resolution   X-ray(1.8Å)   09-Sep-03
1o23   ×1   Crystal structure of lactose synthase in the presence of udp-glucose   X-ray(2.32Å)   25-Feb-03
1o7o   ×1   Roles of individual residues of alpha-1,3 galactosyltransferases in substrate binding and catalysis   X-ray(1.97Å)   06-Nov-03
1o7q   ×3   Roles of individual residues of alpha-1,3 galactosyltransferases in substrate binding and catalysis   X-ray(1.3Å)   06-Nov-03
1o7r   ×1   Roles on individual residues of alpha-1,3 galactosyltransferases in substrate binding and catalysis   X-ray(2Å)   06-Nov-03
1on8   ×1   Crystal structure of mouse alpha-1,4-n-acetylhexosaminyltransferase (extl2) with udp and glcuab(1-3)galb(1-o)-naphthalenelmethanol an acceptor substrate analog   X-ray(2.7Å)   22-Apr-03
1pzy   ×1   W314a-beta1,4-galactosyltransferase-i complexed with alpha-lactalbumin in the presence of n-acetylglucosamine, udp and manganese   X-ray(2.3Å)   02-Sep-03
1qgq   ×0   Udp-manganese complex of spsa from bacillus subtilis   X-ray(1.5Å)   04-May-00
1qgs   ×0   Udp-magnesium complex of spsa from bacillus subtilis   X-ray(2Å)   04-May-00
1qkj   ×0   T4 phage b-glucosyltransferase, substrate binding and proposed catalytic mechanism   X-ray(2.3Å)   28-Jul-99
1r7y   ×0   Glycosyltransferase a in complex with 3-amino-acceptor analog inhibitor and uridine diphosphate   X-ray(1.75Å)   10-Feb-04
1r80   ×0   Glycosyltransferase b in complex with 3-amino-acceptor analog inhibitor and uridine diphosphate   X-ray(1.65Å)   10-Feb-04
1sxq   ×1   Bgt in complex with a 13mer DNA containing a central c:g base pair and udp   X-ray(1.8Å)   22-Jun-04
1v83   ×1   Crystal structure of human glcat-p in complex with udp and mn2+   X-ray(1.9Å)   25-May-04
1v84   ×1   Crystal structure of human glcat-p in complex with n- acetyllactosamine, udp, and mn2+   X-ray(1.82Å)   25-May-04
1vzt   ×1   Roles of individual residues of alpha-1,3 galactosyltransferases in substrate binding and catalysis   X-ray(2Å)   26-May-05
1vzu   ×1   Roles of active site tryptophans in substrate binding and catalysis by alpha-1,3 galactosyltransferase   X-ray(1.97Å)   08-Jul-04
1vzx   ×1   Roles of active site tryptophans in substrate binding and catalysis by alpha-1,3 galactosyltransferase   X-ray(1.97Å)   08-Jul-04
1wt1   ×0   Mutant abo(h) blood group glycosyltransferase with bound udp and acceptor   X-ray(1.55Å)   07-Dec-04
1wt2   ×0   Mutant human abo(h) blood group glycosyltransferase a with bound udp and inhibitor   X-ray(1.9Å)   07-Dec-04
1wt3   ×0   Mutant human abo(h) blood group glycosyltransferase with bound udp and acceptor   X-ray(1.8Å)   03-Dec-04
1xjg   ×1   Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: datp-udp complex   X-ray(2.5Å)   20-Dec-05
1xv5   ×0   Alpha-glucosyltransferase (agt) in complex with udp   X-ray(1.73Å)   30-Aug-05
1y6f   ×0   Alpha-glucosyltransferase in complex with udp-glucose and DNA containing an abasic site   X-ray(2.4Å)   30-Aug-05
1y6g   ×1   Alpha-glucosyltransferase in complex with udp and a 13_mer DNA containing a hmu base at 2.8 a resolution   X-ray(2.8Å)   30-Aug-05
1y8z   ×1   Alpha-glucosyltransferase in complex with udp and a 13-mer DNA containing a hmu base at 1.9 a resolution   X-ray(1.9Å)   30-Aug-05
1ya6   ×1   Alpha-glucosyltransferase in complex with udp and a 13-mer DNA containing a central a:g mismatch   X-ray(2.4Å)   30-Aug-05
1yro   ×1   Crystal structure of beta14,-galactosyltransferase mutant arg228lys in complex with alpha-lactalbumin in the presence of udp-galactose and mn   X-ray(1.9Å)   22-Mar-05
1zct   ×1   Structure of glycogenin truncated at residue 270 in a complex with udp   X-ray(2.6Å)   26-Apr-05
1zi5   ×0   Crystal structure of human n-acetylgalactosaminyltransferase (gta) complexed with h type i trisaccharide   X-ray(1.55Å)   13-Dec-05
1zj2   ×0   Crystal structure of human galactosyltransferase (gtb) complexed with h type i trisaccharide   X-ray(1.69Å)   13-Dec-05
1zjo   ×0   Crystal structure of human n-acetylgalactosaminyltransferase (gta) complexed with galactose-grease   X-ray(1.64Å)   13-Dec-05
1zjp   ×0   Crystal structure of human galactosyltransferase (gtb) complexed with galactose-grease   X-ray(1.59Å)   13-Dec-05
2a2z   ×3   Crystal structure of human deoxycytidine kinase in complex with deoxycytidine and uridine diphosphate   X-ray(3.02Å)   17-Jan-06
2a8u   ×0   Crystal structure of human galactosyltransferase (gtb) complexed with beta-methyl lactoside   X-ray(1.69Å)   13-Dec-05
2a8w   ×0   Crystal structure of human n-acetylgalactosaminyltransferase (gta) complexed with beta-methyllactoside   X-ray(1.59Å)   13-Dec-05
2acv   ×1   Crystal structure of medicago truncatula ugt71g1   X-ray(2Å)   15-Nov-05
2aiz   ×0   Solution structure of peptidoglycan associated lipoprotein from haemophilus influenza bound to udp-n-acetylmuramoyl-l-alanyl-d- glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine   NMR(20 models)   14-Mar-06
2am5   ×0   Crystal structure of n-acetylglucosaminyltransferase i in complex with udp   X-ray(1.6Å)   27-Jun-06
2b69   ×1   Crystal structure of human udp-glucoronic acid decarboxylase   X-ray(1.21Å)   18-Oct-05
2bgu   ×0   Crystal structure of the DNA modifying enzyme beta-glucosyltransferase in the presence and absence of the substrate uridine diphosphoglucose   X-ray(2.2Å)   09-Dec-95
2bis   ×0   Structure of glycogen synthase from pyrococcus abyssi   X-ray(2.8Å)   28-Nov-05
2bnd   ×1   The structure of e. Coli ump kinase in complex with udp   X-ray(2.6Å)   27-Apr-05
2bvl   ×0   Crystal structure of the catalytic domain of toxin b from clostridium difficile in complex with udp, glc and manganese ion   X-ray(2.2Å)   03-Aug-05
2bvm   ×0   Crystal structure of the catalytic domain of toxin b from clostridium difficile in complex with udp, glc and manganese ion   X-ray(2.55Å)   03-Aug-05
2c1x   ×0   Structure and activity of a flavonoid 3-o glucosyltransferase reveals the basis for plant natural product modification   X-ray(1.9Å)   09-Jan-06
2c9z   ×0   Structure and activity of a flavonoid 3-0 glucosyltransferase reveals the basis for plant natural product modification   X-ray(2.1Å)   09-Jan-06
2cvv   ×0   Structures of yeast ribonucleotide reductase i   X-ray(2.9Å)   07-Mar-06
2d7i   ×0   Crystal structure of pp-galnac-t10 with udp, galnac and mn2+   X-ray(2.5Å)   07-Nov-06
2d7r   ×0   Crystal structure of pp-galnac-t10 complexed with galnac-ser on lectin domain   X-ray(2.8Å)   07-Nov-06
2ffu   ×0   Crystal structure of human ppgalnact-2 complexed with udp and ea2   X-ray(1.64Å)   31-Jan-06
2ffv   ×1   Human ppgalnact-2 complexed with manganese and udp   X-ray(2.75Å)   31-Jan-06
2fyb   ×0   Crystal structure of the catalytic domain of the human beta1,4- galactosyltransferase mutant m339h in complex with mn and udp- galactose in open conformation   X-ray(1.9Å)   14-Mar-06
2fyc   ×1   Crystal structure of the catalytic domain of bovine beta1,4- galactosyltransferase-i in complex with alpha-lactalbumin, ca and udp-galactose   X-ray(2Å)   14-Mar-06
2fyd   ×1   Catalytic domain of bovine beta 1, 4-galactosyltransferase in complex with alpha-lactalbumin, glucose, mn, and udp-n-acetylgalactosamine   X-ray(2Å)   14-Mar-06
2gn8   ×1   Crystal structure of udp-glcnac inverting 4,6-dehydratase in complex with NADP and udp   X-ray(2.1Å)   09-May-06
2ier   ×1   Crystal structure of aquifex aeolicus lpxc complexed with uridine 5'- diphosphate   X-ray(2.7Å)   09-Jan-07
2iv3   ×3   Crystal structure of avigt4, a glycosyltransferase involved in avilamycin a biosynthesis   X-ray(2.3Å)   11-Oct-06
2iv7   ×0   Crystal structure of waag, a glycosyltransferase involved in lipopolysaccharide biosynthesis   X-ray(1.6Å)   11-Oct-06
2iya   ×1   The crystal structure of macrolide glycosyltransferases: a blueprint for antibiotic engineering   X-ray(1.7Å)   27-Mar-07
2iyf   ×1   The crystal structure of macrolide glycosyltransferases: a blueprint for antibiotic engineering   X-ray(1.7Å)   27-Mar-07
2j0b   ×0   Structure of the catalytic domain of mouse manic fringe in complex with udp and manganese   X-ray(2.1Å)   04-Sep-06
2j65   ×1   Structure of lpxc from aquifex aeolicus in complex with udp   X-ray(2.2Å)   08-Nov-06
2jcj   ×0   Crystal structure of alpha-1,3 galactosyltransferase (c-terminus truncated mutant-c3) in complex with udp and tris   X-ray(2.02Å)   22-May-07
2jck   ×0   Crystal structure of alpha-1,3 galactosyltransferase (r365k) in complex with udp and 2 manganese ion   X-ray(1.8Å)   22-May-07
2o1h   ×0   Naturally occurring mutation of humna abo(h) galactosyltransferase in complex with udp: gtb/m214t_udp   X-ray(1.67Å)   06-Feb-07
2p73   ×0   Crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of pbcv-1   X-ray(2.3Å)   21-Aug-07
2pnz   ×0   Crystal structure of the p. Abyssi exosome rnase ph ring complexed with udp and gmp   X-ray(2.14Å)   18-Mar-08
2pzl   ×1   Crystal structure of the bordetella bronchiseptica enzyme wbmg in complex with NAD and udp   X-ray(2.39Å)   02-Oct-07

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