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EBI
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PDBsum
Ligand clusters for UniProt code Q9XZT6
Ligand clusters for Q9XZT6: Deoxynucleoside kinase from Drosophila melanogaster
Top 6 (of 9) ligand clusters
Cluster 1.
15 ligand types
30 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
3 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 6ybhA
Structures
PDB
Schematic diagram
6ybh
A
2vp2
A
1zmx
A
2vp5
A
2vp9
A
more ...
Cluster 1 contains 15 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 3
PDB codes:
1oe0
(A),
2jcs
(A),
2vp0
(A).
2. Ligand:
AZZ × 1
zidovudine
3'-Azido-3'-Deoxythymidine
PDB code:
2jj8
(A).
3. Ligand:
BVD × 1
brivudine
5-Bromovinyldeoxyuridine
PDB code:
2vqs
(A).
4. Ligand:
GEO × 1
gemcitabine
Gemcitabine
PDB code:
2vpp
(A).
5. Ligand:
TTP × 3
Thymidine-5'-Triphosphate
PDB codes:
1oe0
(A),
1zm7
(A),
2jcs
(A).
6. Ligand:
DCZ × 1
2'-Deoxycytidine
PDB code:
1j90
(A).
7. Ligand:
THM × 2
Thymidine
PDB codes:
1ot3
(A),
1zmx
(A).
8. Ligand:
SO4 × 11
Sulfate ion
PDB codes:
1j90
(A),
1ot3
(A),
1zmx
(A),
2jj8
(A),
2vp5
(A),
2vp6
(A),
2vp9
(A),
2vpp
(A),
2vqs
(A),
6ybh
(A).
9. Ligand:
TTP × 1
Thymidine-5'-Triphosphate
PDB code:
2vp0
(A).
10. Ligand:
DCZ × 1
2'-Deoxycytidine
PDB code:
2vp5
(A).
11. Ligand:
4PC × 1
3-(2'-Deoxy-5-O-Phosphono-Beta-D-Erythro- Pentofuranosyl)-6-Methyl-3,7-Dihydro-2h-Pyrrolo[2,3-
D]pyrimidin-2-One
PDB code:
6ybh
(A).
12. Ligand:
5FU × 1
5-Fluoro-Uridine-5'-Monophosphate
PDB code:
2vp6
(A).
13. Ligand:
DCP × 1
2'-Deoxycytidine-5'-Triphosphate
PDB code:
2vp4
(A).
14. Ligand:
DGT × 1
2'-Deoxyguanosine-5'-Triphosphate
PDB code:
2vp2
(A).
15. Ligand:
DOC × 1
2',3'-Dideoxycytidine-5'-Monophosphate
PDB code:
2vp9
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6ybh
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
6ybh
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
1ot3
(A),
2vp6
(A),
2vp9
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
6ybh
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
6ybh
(A).