Ligand clusters for UniProt code Q9V119

Ligand clusters for Q9V119: Exosome complex component Rrp41 from Pyrococcus abyssi (strain GE5 / Orsay)

		5 ligand clusters Cluster 1. 4 ligand types 7 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 2 ligands
Representative protein: 2pnzA

Structures

PDB		Schematic diagram
2pnzA
2po1A
2po0A
2po2A

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: MPD × 4 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 2pnz(A), 2po0(A), 2po1(A), 2po2(A).
		2. Ligand: ADP × 1 Adenosine-5'-Diphosphate PDB code: 2po0(A).
		3. Ligand: CDP × 1 Cytidine-5'-Diphosphate PDB code: 2po2(A).
		4. Ligand: UDP × 1 Uridine-5'-Diphosphate PDB code: 2pnz(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: 5GP × 1 Guanosine-5'-Monophosphate PDB code: 2pnz(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2pnz(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2pnz(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 2po1(A), 2po2(A).