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EBI
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PDBsum
Ligand clusters for UniProt code Q9V118
Ligand clusters for Q9V118: Exosome complex component Rrp42 from Pyrococcus abyssi (strain GE5 / Orsay)
6 ligand clusters
Cluster 1.
1 ligand type
1 ligand
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
4 ligands
Cluster 4.
1 ligand type
4 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 2pnzB
Structures
PDB
Schematic diagram
2pnz
B
2po2
B
2po0
B
2po1
B
Cluster 1 contains 1 ligand type
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Ligand
Description
1. Ligand:
5GP × 1
Guanosine-5'-Monophosphate
PDB code:
2pnz
(B).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
MPD × 1
(4s)-2-Methyl-2,4-Pentanediol
PDB code:
2pnz
(B).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
MPD × 4
(4s)-2-Methyl-2,4-Pentanediol
PDB codes:
2pnz
(B),
2po0
(B),
2po1
(B),
2po2
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
MPD × 4
(4s)-2-Methyl-2,4-Pentanediol
PDB codes:
2pnz
(B),
2po0
(B),
2po1
(B),
2po2
(B).
Cluster 5 contains 1 ligand type
Selection shortcuts:
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Ligand
Description
1. Ligand:
MPD × 2
(4s)-2-Methyl-2,4-Pentanediol
PDB codes:
2po1
(B),
2po2
(B).
Cluster 6 contains 1 ligand type
Selection shortcuts:
select all/none
invert selection.
Ligand
Description
1. Ligand:
MPD × 2
(4s)-2-Methyl-2,4-Pentanediol
PDB codes:
2po1
(B),
2po2
(B).