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Ligand clusters for UniProt code Q9UXC0

Ligand clusters for Q9UXC0: Exosome complex component Rrp42 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)

4 ligand clusters
Cluster 1.
3 ligand types
5 ligands
Cluster 2.
2 ligand types
7 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
2 ligands
Representative protein: 2je6A  
JSmol
 

Structures

PDB   Schematic diagram
2je6A    
2c38A    
2c37A    
2jebA    
4ba1A    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: U5P × 3
Uridine-5'-Monophosphate
PDB codes: 2c37(A),


 
2. Ligand: AMP-AMP-AMP-AMP × 1
AMP=Adenosine monophosphate.
PDB code: 2c38(A).


 
3. Ligand: PO4 × 1
Phosphate ion
PDB code: 4ba1(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: 1PE × 5
Pentaethylene glycol
PDB codes: 2je6(A), 2jea(A), 2jeb(A), 4ba1(A), 4ba2(A).


 
2. Ligand: PEG × 2
Di(hydroxyethyl)ether
PDB codes: 2je6(A), 4ba1(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description

_Mn
 
1. Metal: _MN × 1
PDB code: 2jeb(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 2
PDB codes: 4ba1(A), 4ba2(A).

 

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