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Ligand clusters for UniProt code Q9RWH9

Ligand clusters for Q9RWH9: Uracil-DNA glycosylase from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)

5 ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Representative protein: 2booA  
JSmol
 

Structures

PDB   Schematic diagram
2booA    
4uqmA    
3ufmA    

 

 Cluster 1 contains 2 ligand types

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Ligand Description


 
1. Ligand: ASP-LEU-PRO-PHE × 1
PDB code: 3ufm(A).


 
2. Ligand: NO3 × 1
Nitrate ion
PDB code: 2boo(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 4uqm(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: NO3 × 1
Nitrate ion
PDB code: 2boo(A).

_Cl
 
2. Metal: _CL × 1
PDB code: 4uqm(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: NO3 × 1
Nitrate ion
PDB code: 2boo(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

Iod
 
1. Metal: IOD × 1
PDB code: 3ufm(A).

 

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