Ligand clusters for UniProt code Q9KDT3

Ligand clusters for Q9KDT3: Sodium-dependent transporter from Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

		Top 6 (of 11) ligand clusters Cluster 1. 5 ligand types 11 ligands Cluster 2. 4 ligand types 21 ligands Cluster 3. 8 ligand types 9 ligands Cluster 4. 2 ligand types 2 ligands Cluster 5. 2 ligand types 4 ligands Cluster 6. 3 ligand types 12 ligands
Representative protein: 6yu4A

Structures

PDB		Schematic diagram
6yu4A
6yu2A
6yu6A
6yu3A
6yu7A
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: BNG × 5 Nonyl beta-D-Glucopyranoside PDB codes: 4us3(A), 6yu5(A), 6yu7(A).
		2. Ligand: 78M × 2 (2s)-2,3-Dihydroxypropyl(7z)-Pentadec-7-Enoate PDB codes: 4us4(A),
		3. Ligand: SOG × 2 Octyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 6yu3(A), 6yu4(A).
		4. Ligand: BOG × 1 Octyl beta-D-Glucopyranoside PDB code: 6yu2(A).
		5. Ligand: LMT × 1 Dodecyl-Beta-D-Maltoside PDB code: 6yu4(A).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: LMT × 11 Dodecyl-Beta-D-Maltoside PDB codes: 6yu3(A), 6yu4(A), 6yu6(A), 6yu7(A),
		2. Ligand: BNG × 5 Nonyl beta-D-Glucopyranoside PDB codes: 6yu5(A),
		3. Ligand: LMU × 4 Dodecyl-Alpha-D-Maltoside PDB codes: 4us3(A),
		4. Ligand: 78N × 1 (2r)-2,3-Dihydroxypropyl(7z)-Pentadec-7-Enoate PDB code: 4us4(A).

Cluster 3 contains 8 ligand types

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Ligand		Description
		1. Ligand: PHE × 1 phenylalanine PDB code: 6yu3(A).
		2. Ligand: VAL × 1 valine PDB code: 6yu5(A).
		3. Ligand: TRP × 2 PDB codes: 4us3(A), 4us4(A).
		4. Ligand: ILE × 1 PDB code: 6yu2(A).
		5. Ligand: LEU × 1 PDB code: 6yu6(A).
		6. Ligand: PFF × 1 4-Fluoro-L-Phenylalanine PDB code: 6yu4(A).
		7. Ligand: TYR × 1 PDB code: 6yu7(A).
_Na		8. Metal: _NA × 1 PDB code: 4us4(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: LMT × 1 Dodecyl-Beta-D-Maltoside PDB code: 6yu4(A).
		2. Ligand: LMU × 1 Dodecyl-Alpha-D-Maltoside PDB code: 4us3(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: LMT × 3 Dodecyl-Beta-D-Maltoside PDB codes: 6yu4(A), 6yu5(A), 6yu6(A).
		2. Ligand: LMU × 1 Dodecyl-Alpha-D-Maltoside PDB code: 4us3(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: BNG × 6 Nonyl beta-D-Glucopyranoside PDB codes: 4us3(A), 6yu5(A), 6yu7(A).
		2. Ligand: SOG × 4 Octyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 6yu3(A), 6yu4(A), 6yu6(A),
		3. Ligand: BOG × 2 Octyl beta-D-Glucopyranoside PDB codes: 6yu2(A),