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Ligand clusters for UniProt code Q9HVM5
Ligand clusters for Q9HVM5: Lipoprotein signal peptidase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
3 ligand clusters
Cluster 1.
2 ligand types
25 ligands
Cluster 2.
1 ligand type
9 ligands
Cluster 3.
1 ligand type
1 ligand
Representative protein: 5dirA
Structures
PDB
Schematic diagram
5dir
A
6fms
A
6fms
C
5dir
C
5dir
B
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
OLC × 20
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes:
5dir
(A),
6fms
(A),
2. Ligand:
MLE-IIL-SER-ALO-5BV × 5
MLE
=N-Methylleucine,
IIL
=Iso-Isoleucine,
ALO
=Allo-Threonine,
5BV
=(2r,3r)-3-(Glycyloxy)-2-Methylnonanoic acid.
PDB codes:
5dir
(A),
6fms
(A),
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
OLC × 9
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB codes:
5dir
(A),
6fms
(A),
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
OLC × 1
(2r)-2,3-Dihydroxypropyl (9z)-Octadec-9-Enoate
PDB code:
5dir
(B).