Ligand clusters for UniProt code Q9GZT9

Ligand clusters for Q9GZT9: Egl nine homolog 1 from Homo sapiens

		Top 6 (of 16) ligand clusters Cluster 1. 32 ligand types 109 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 4 ligand types 6 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 3 ligand types 13 ligands Cluster 6. 2 ligand types 3 ligands
Representative protein: 4kbzA

Structures

PDB		Schematic diagram
4kbzA
3oujA
3hqrA
5la9A
3ouhA
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Cluster 1 contains 32 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
_Mn		1. Metal: _MN × 30 PDB codes: 3hqr(A), 4bqw(A), 4bqx(A), 4uwd(A), 5a3u(A), 5l9b(A), 5l9r(A), 5l9v(A), 5la9(A), 5las(A), 5lat(A), 5lb6(A), 5lbb(A), 5lbc(A), 5lbe(A), 5lbf(A), 5ox5(A), 5ox6(A), 6qgv(A), 6st3(A), 6yvt(A), 6yvx(A), 6yvz(A), 6yw1(A), 6yw2(A), 6yw3(A), 6yw4(A), 6zbn(A), 6zbo(A).
		2. Ligand: IPA × 1 isopropyl alcohol Isopropyl alcohol PDB code: 6qgv(A).
_Zn		3. Metal: _ZN × 1 PDB code: 2y33(A).
		4. Ligand: UN9 × 15 N-[(1-Chloro-4-Hydroxyisoquinolin-3-Yl)carbonyl]glycine PDB codes: 2hbt(A), 2hbu(A), 2y33(A), 2y34(A), 3hqu(A), 4bqx(A), 4uwd(A), 5lat(A), 5lb6(A), 5lbb(A), 5lbc(A), 5lbe(A), 5lbf(A), 6yw2(A).
Fe2		5. Metal: FE2 × 13 PDB codes: 2g19(A), 2g1m(A), 2hbt(A), 2hbu(A), 2y34(A), 3hqu(A), 3ouh(A), 3oui(A), 3ouj(A), 4bqy(A), 4kbz(A), 5v18(A), 6nmq(A).
		6. Ligand: SO4 × 11 Sulfate ion PDB codes: 3ouh(A), 3ouj(A), 4kbz(A), 5l9r(A), 5la9(A), 5lb6(A), 5lbc(A), 5ox6(A), 5v18(A), 6yw4(A).
		7. Ligand: OGA × 7 N-Oxalylglycine PDB codes: 3hqr(A), 5l9r(A), 5l9v(A), 5la9(A), 5las(A), 6yw3(A), 6yw4(A).
		8. Ligand: AKG × 3 2-Oxoglutaric acid PDB codes: 3ouj(A), 5l9b(A), 6yw1(A).
		9. Ligand: 2JP × 2 4-(Isoquinolin-3-Ylamino)-4-Oxobutanoic acid PDB codes: 6yvx(A), 6yw0(A).
		10. Ligand: 4HG × 2 N-[(4-Hydroxy-8-Iodoisoquinolin-3-Yl)carbonyl]glycine PDB codes: 2g19(A), 2g1m(A).
		11. Ligand: PW2 × 2 2-[[5-(6-Methoxynaphthalen-2-Yl)-3-Oxidanyl-Pyridin-2- Yl]carbonylamino]ethanoic acid PDB codes: 6yvt(A),
		12. Ligand: R8J × 2 6-(5-Oxo-4-(1h-1,2,3-Triazol-1-Yl)-2,5-Dihydro-1h- Pyrazol-1-Yl)nicotinic acid PDB codes: 5a3u(A),
		13. Ligand: 014 × 1 1-(5-Chloro-6-Fluoro-1h-Benzimidazol-2-Yl)-1h-Pyrazole- 4-Carboxylic acid PDB code: 3ouh(A).
		14. Ligand: 1QA × 1 (2s)-({[2-(5-Cyano-3-Hydroxypyridin-2-Yl)-1,3-Thiazol- 4-Yl]acetyl}amino)(phenyl)ethanoic acid PDB code: 4kbz(A).
		15. Ligand: 42Z × 1 N-[(5,6-Dichloro-1h-Benzimidazol-2-Yl)carbonyl]glycine PDB code: 3oui(A).
		16. Ligand: 4JR × 1 2-(Biphenyl-4-Yl)-8-[(1-Methyl-1h-Imidazol-2-Yl) methyl]-2,8-Diazaspiro[4.5]decan-1-One PDB code: 4jzr(A).
		17. Ligand: 8UY × 1 4-([1,2,4]triazolo[1,5-A]pyridin-5-Yl)benzonitrile PDB code: 5v18(A).
		18. Ligand: A1Z × 1 Vadadustat PDB code: 5ox6(A).
		19. Ligand: B2E × 1 (6-Hydroxy-1,3-Dimethyl-2,4-Dioxo-1,2,3,4- Tetrahydropyrimidine-5-Carbonyl)glycine PDB code: 5ox5(A).
		20. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4jzr(A).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: QEE × 1 ~{Tert}-Butyl 6-[5-Oxidanyl-4-(1,2,3-Triazol-1-Yl) pyrazol-1-Yl]pyridine-3-Carboxylate PDB code: 6zbn(A).
		2. Ligand: R8J × 1 6-(5-Oxo-4-(1h-1,2,3-Triazol-1-Yl)-2,5-Dihydro-1h- Pyrazol-1-Yl)nicotinic acid PDB code: 5a3u(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5lbc(A).
		2. Ligand: SO4 × 3 Sulfate ion PDB codes: 4kbz(A), 5lbf(A), 5ox6(A).
		3. Ligand: ACT × 1 Acetate ion PDB code: 3oui(A).
		4. Ligand: OGA × 1 N-Oxalylglycine PDB code: 5l9r(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: 42Z × 1 N-[(5,6-Dichloro-1h-Benzimidazol-2-Yl)carbonyl]glycine PDB code: 3oui(A).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 5lb6(A), 5ox6(A).
		2. Ligand: BCT × 10 Bicarbonate ion PDB codes: 5lat(A), 5lbb(A), 5lbc(A), 5lbe(A), 5lbf(A), 5ox5(A), 6yvx(A), 6yvz(A), 6yw0(A), 6yw1(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 5l9r(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6yvw(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 5lbf(A), 5v18(A).