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EBI
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PDBsum
Ligand clusters for UniProt code Q9FUZ2
Ligand clusters for Q9FUZ2: Peptide deformylase 1B, chloroplastic/mitochondrial from Arabidopsis thaliana
Top 6 (of 10) ligand clusters
Cluster 1.
3 ligand types
20 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
21 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
10 ligands
Representative protein: 3cpmA
Structures
PDB
Schematic diagram
3cpm
A
3pn3
A
3m6o
A
3o3j
A
3pn5
A
more ...
Cluster 1 contains 3 ligand types
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Ligand
Description
_Zn
1. Metal:
_ZN × 15
PDB codes:
3cpm
(A),
3m6o
(A),
3m6p
(A),
3m6q
(A),
3m6r
(A),
3o3j
(A),
3pn2
(A),
3pn3
(A),
3pn4
(A),
3pn5
(A),
3pn6
(A).
2. Ligand:
BB2 × 4
Actinonin
PDB codes:
3m6p
(A),
3m6q
(A),
3m6r
(A),
3pn4
(A).
3. Ligand:
BB4 × 1
2-(5-Bromo-1h-Indol-3-Yl)-N-Hydroxyacetamide
PDB code:
3o3j
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
PN3 × 1
Tert-Butyl {(2s)-1-[Formyl(hydroxy)amino]-3- Phenylpropan-2-Yl}carbamate
PDB code:
3pn3
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3cpm
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 21
PDB codes:
3cpm
(A),
3m6o
(A),
3m6p
(A),
3m6q
(A),
3m6r
(A),
3o3j
(A),
3pn2
(A),
3pn3
(A),
3pn4
(A),
3pn5
(A),
3pn6
(A),
Cluster 5 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 2
PDB codes:
3cpm
(A),
3o3j
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Zn
1. Metal:
_ZN × 10
PDB codes:
3cpm
(A),
3m6o
(A),
3m6p
(A),
3m6q
(A),
3o3j
(A),
3pn2
(A),
3pn3
(A),
3pn4
(A),
3pn5
(A),
3pn6
(A).