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Ligand clusters for UniProt code Q8ZNT7

Ligand clusters for Q8ZNT7: D-cysteine desulfhydrase from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

3 ligand clusters
Cluster 1.
10 ligand types
15 ligands
Cluster 2.
2 ligand types
12 ligands
Cluster 3.
1 ligand type
1 ligand
Representative protein: 4d8uA  
JSmol
 

Structures

PDB   Schematic diagram
4d8uA    
4d8tA    
4d8wA    
4d92A    
4d96A    
 more ...

 

 Cluster 1 contains 10 ligand types

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Ligand Description


 
1. Ligand: PYR × 2
pyruvic acid
Pyruvic acid
PDB codes: 4d8w(A), 4d92(A).


 
2. Ligand: DSN × 1
d-serine
D-Serine
PDB code: 4d97(A).


 
3. Ligand: SO4 × 4
Sulfate ion
PDB codes: 4d8t(A), 4d8w(A), 4d92(A), 4d96(A).


 
4. Ligand: PMP × 2
4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate
PDB codes: 4d9b(A), 4d9c(A).


 
5. Ligand: 5PA × 1
N-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4-Y- Lmethyl]-1-Amino-
Cyclopropanecarboxylic acid
PDB code: 4d96(A).


 
6. Ligand: DCS × 1
D-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethyl]-N,O-Cycloserylamide
PDB code: 4d9f(A).


 
7. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 4d9b(A).


 
8. Ligand: LCS × 1
[5-Hydroxy-6-Methyl-4-({[(4e)-3-Oxo-1,2-Oxazolidin-4- Ylidene]amino}methyl)pyridin-3-
Yl]methyl dihydrogen phosphate
PDB code: 4d9e(A).


 
9. Ligand: PO4 × 1
Phosphate ion
PDB code: 4d8u(A).


 
10. Ligand: SER × 1
PDB code: 4d99(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: BEN × 10
Benzamidine
PDB codes: 4d8t(A), 4d8w(A), 4d92(A), 4d96(A), 4d97(A), 4d99(A), 4d9b(A), 4d9c(A), 4d9e(A), 4d9f(A).

_Cl
 
2. Metal: _CL × 2
PDB codes: 4d8t(A), 4d8w(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 4d9b(A).

 

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