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Ligand clusters for UniProt code Q8ZNT7
Ligand clusters for Q8ZNT7: D-cysteine desulfhydrase from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
3 ligand clusters
Cluster 1.
10 ligand types
15 ligands
Cluster 2.
2 ligand types
12 ligands
Cluster 3.
1 ligand type
1 ligand
Representative protein: 4d8uA
Structures
PDB
Schematic diagram
4d8u
A
4d8t
A
4d8w
A
4d92
A
4d96
A
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Cluster 1 contains 10 ligand types
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Ligand
Description
1. Ligand:
PYR × 2
pyruvic acid
Pyruvic acid
PDB codes:
4d8w
(A),
4d92
(A).
2. Ligand:
DSN × 1
d-serine
D-Serine
PDB code:
4d97
(A).
3. Ligand:
SO4 × 4
Sulfate ion
PDB codes:
4d8t
(A),
4d8w
(A),
4d92
(A),
4d96
(A).
4. Ligand:
PMP × 2
4'-Deoxy-4'-Aminopyridoxal-5'-Phosphate
PDB codes:
4d9b
(A),
4d9c
(A).
5. Ligand:
5PA × 1
N-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4-Y- Lmethyl]-1-Amino-
Cyclopropanecarboxylic acid
PDB code:
4d96
(A).
6. Ligand:
DCS × 1
D-[3-Hydroxy-2-Methyl-5-Phosphonooxymethyl-Pyridin-4- Ylmethyl]-N,O-Cycloserylamide
PDB code:
4d9f
(A).
7. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
4d9b
(A).
8. Ligand:
LCS × 1
[5-Hydroxy-6-Methyl-4-({[(4e)-3-Oxo-1,2-Oxazolidin-4- Ylidene]amino}methyl)pyridin-3-
Yl]methyl dihydrogen phosphate
PDB code:
4d9e
(A).
9. Ligand:
PO4 × 1
Phosphate ion
PDB code:
4d8u
(A).
10. Ligand:
SER × 1
PDB code:
4d99
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
BEN × 10
Benzamidine
PDB codes:
4d8t
(A),
4d8w
(A),
4d92
(A),
4d96
(A),
4d97
(A),
4d99
(A),
4d9b
(A),
4d9c
(A),
4d9e
(A),
4d9f
(A).
_Cl
2. Metal:
_CL × 2
PDB codes:
4d8t
(A),
4d8w
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
4d9b
(A).