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EBI
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Ligand clusters for UniProt code Q8RDB0
Ligand clusters for Q8RDB0: Carbamoyltransferase from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Top 6 (of 13) ligand clusters
Cluster 1.
2 ligand types
4 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
2 ligands
Representative protein: 3vthA
Structures
PDB
Schematic diagram
3vth
A
3vti
A
3vth
B
Cluster 1 contains 2 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 2
PDB codes:
3vth
(A),
2. Ligand:
APC × 2
Diphosphomethylphosphonic acid adenosyl ester
PDB codes:
3vth
(A),
Cluster 2 contains 2 ligand types
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Ligand
Description
_Fe
1. Metal:
_FE × 3
PDB codes:
3vth
(A),
3vti
(A).
2. Ligand:
AP2 × 2
Phosphomethylphosphonic acid adenosyl ester
PDB codes:
3vth
(A),
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3vth
(A).
2. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3vth
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
3vth
(A),
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
3vth
(A),
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 2
Phosphate ion
PDB codes:
3vth
(A),