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Ligand clusters for UniProt code Q8IWV8

Ligand clusters for Q8IWV8: E3 ubiquitin-protein ligase UBR2 from Homo sapiens

Top 6 (of 7) ligand clusters
Cluster 1.
5 ligand types
5 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
6 ligands
Cluster 6.
1 ligand type
6 ligands
Representative protein: 3ny2A  
JSmol
 

Structures

PDB   Schematic diagram
3ny2A    
5um3A    
3ny3A    
5tdbA    
5tddA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: ARG-ILE-PHE-SER × 1
PDB code: 3ny3(A).


 
2. Ligand: ARG-LEU × 1
PDB code: 5tda(A).


 
3. Ligand: DA2-ILE × 1
DA2=Ng,Ng-Dimethyl-L-Arginine.
PDB code: 5tdb(A).


 
4. Ligand: HIS-ILE-PHE-SER × 1
PDB code: 5tdd(A).


 
5. Ligand: TRP × 1
PDB code: 5tda(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 5tdb(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 5tdd(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 5tdd(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Zn
 
1. Metal: _ZN × 6
PDB codes: 3ny2(A), 3ny3(A), 5tda(A), 5tdb(A), 5tdd(A), 5um3(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Zn
 
1. Metal: _ZN × 6
PDB codes: 3ny2(A), 3ny3(A), 5tda(A), 5tdb(A), 5tdd(A), 5um3(A).

 

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