Ligand clusters for UniProt code Q8DJ43

Ligand clusters for Q8DJ43: Photosystem II reaction center protein H from Thermosynechococcus elongatus (strain BP-1)

		3 ligand clusters Cluster 1. 10 ligand types 222 ligands Cluster 2. 3 ligand types 57 ligands Cluster 3. 2 ligand types 3 ligands
Representative protein: 3bz1H

Structures

PDB		Schematic diagram
3bz1H
4fbyH
3prqH
3kziH
7nhoH
		more ...

Cluster 1 contains 10 ligand types

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Ligand		Description
		1. Ligand: BCR × 25 beta carotene Beta-Carotene PDB codes: 2axt(H), 3bz1(H), 3bz2(H), 3kzi(H), 3prq(H), 3prr(H), 4fby(H), 4ixq(H), 4ixr(H), 4pbu(H), 4pj0(H), 4rvy(H), 4tnh(H), 4tni(H), 4tnj(H), 4tnk(H), 5e79(H), 5e7c(H), 5kaf(H), 5kai(H), 5mx2(H), 5tis(H), 7nho(H), 7nhp(H), 7nhq(H).
		2. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 5zzn(H).
		3. Ligand: CLA × 151 Chlorophyll a PDB codes: 1s5l(H), 2axt(H), 3bz1(H), 3bz2(H), 3kzi(H), 3prq(H), 3prr(H), 4fby(H), 4ixq(H), 4ixr(H), 4pbu(H), 4pj0(H), 4rvy(H), 4tnh(H), 4tni(H), 4tnj(H), 4tnk(H), 5e79(H), 5e7c(H), 5h2f(H), 5kaf(H), 5kai(H), 5mx2(H), 5tis(H), 5zzn(H), 7nho(H), 7nhp(H), 7nhq(H),
		4. Ligand: DGD × 24 Digalactosyl diacyl glycerol (dgdg) PDB codes: 2axt(H), 3bz1(H), 3bz2(H), 3kzi(H), 3prq(H), 3prr(H), 4fby(H), 4ixq(H), 4ixr(H), 4pbu(H), 4pj0(H), 4rvy(H), 4tnh(H), 4tni(H), 4tnj(H), 4tnk(H), 5e79(H), 5e7c(H), 5h2f(H), 5kaf(H), 5kai(H), 5mx2(H), 5tis(H), 5zzn(H).
		5. Ligand: LMT × 15 Dodecyl-Beta-D-Maltoside PDB codes: 1s5l(H), 3bz1(H), 3bz2(H), 3kzi(H), 3prq(H), 3prr(H), 4fby(H), 4ixq(H), 4ixr(H), 4tnh(H), 4tni(H), 4tnj(H), 4tnk(H), 5h2f(H), 5zzn(H).
		6. Ligand: RRX × 2 (3r)-Beta,Beta-Caroten-3-Ol PDB codes: 5h2f(H), 5zzn(H).
		7. Ligand: LMG × 1 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB code: 5kaf(H).
		8. Ligand: SQD × 1 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB code: 5kai(H).
		9. Ligand: UNK × 1 PDB code: 2axt(H).
		10. Ligand: UNL × 1 Unknown ligand PDB code: 5zzn(H).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: CLA × 54 Chlorophyll a PDB codes: 2axt(H), 3bz1(H), 3bz2(H), 3kzi(H), 3prq(H), 3prr(H), 4fby(H), 4ixq(H), 4ixr(H), 4pbu(H), 4pj0(H), 4rvy(H), 4tnh(H), 4tni(H), 4tnj(H), 4tnk(H), 5e79(H), 5e7c(H), 5h2f(H), 5kaf(H), 5kai(H), 5mx2(H), 5tis(H), 5zzn(H), 7nho(H), 7nhp(H), 7nhq(H),
		2. Ligand: UNL × 2 Unknown ligand PDB codes: 5kaf(H), 5kai(H).
		3. Ligand: SQD × 1 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB code: 5h2f(H).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 5h2f(H).
		2. Ligand: HTG × 2 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 5h2f(H), 5zzn(H).