Ligand clusters for UniProt code Q8DIQ1

Ligand clusters for Q8DIQ1: Photosystem II CP47 reaction center protein from Thermosynechococcus elongatus (strain BP-1)

		Top 6 (of 14) ligand clusters Cluster 1. 14 ligand types 861 ligands Cluster 2. 3 ligand types 3 ligands Cluster 3. 2 ligand types 5 ligands Cluster 4. 1 ligand type 2 ligands Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 2 ligands
Representative protein: 4pj0B

Structures

PDB		Schematic diagram
4pj0B
5e79B
5tisB
5kafB
5e7cB
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
		1. Ligand: BCR × 105 beta carotene Beta-Carotene PDB codes: 1s5l(B), 2axt(B), 3bz1(B), 3bz2(B), 3kzi(B), 3prq(B), 3prr(B), 4fby(B), 4ixq(B), 4ixr(B), 4pbu(B), 4pj0(B), 4rvy(B), 4tnh(B), 4tni(B), 4tnj(B), 4tnk(B), 5e79(B), 5e7c(B), 5h2f(B), 5kaf(B), 5kai(B), 5mx2(B), 5tis(B), 5zzn(B), 7nho(B), 7nhp(B), 7nhq(B),
		2. Ligand: DMS × 7 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(B), 5zzn(B),
		3. Ligand: CLA × 480 Chlorophyll a PDB codes: 1izl(B), 1s5l(B), 1w5c(B), 2axt(B), 3bz1(B), 3bz2(B), 3kzi(B), 3prq(B), 3prr(B), 4fby(B), 4ixq(B), 4ixr(B), 4pbu(B), 4pj0(B), 4rvy(B), 4tnh(B), 4tni(B), 4tnj(B), 4tnk(B), 5e79(B), 5e7c(B), 5h2f(B), 5kaf(B), 5kai(B), 5mx2(B), 5tis(B), 5zzn(B), 7nho(B), 7nhp(B), 7nhq(B),
		4. Ligand: LMG × 72 1,2-Distearoyl-Monogalactosyl-Diglyceride PDB codes: 3bz1(B), 3bz2(B), 3kzi(B), 3prq(B), 3prr(B), 4fby(B), 4ixq(B), 4ixr(B), 4pj0(B), 4rvy(B), 4tnh(B), 4tni(B), 4tnj(B), 4tnk(B), 5e79(B), 5e7c(B), 5h2f(B), 5kaf(B), 5kai(B), 5mx2(B), 5tis(B), 5zzn(B), 7nho(B), 7nhp(B), 7nhq(B),
		5. Ligand: SQD × 52 1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol PDB codes: 2axt(B), 3bz1(B), 3bz2(B), 3kzi(B), 3prq(B), 3prr(B), 4fby(B), 4ixq(B), 4ixr(B), 4pbu(B), 4pj0(B), 4rvy(B), 4tnh(B), 4tni(B), 4tnj(B), 4tnk(B), 5e79(B), 5e7c(B), 5h2f(B), 5kaf(B), 5kai(B), 5mx2(B), 5tis(B),
		6. Ligand: LMT × 47 Dodecyl-Beta-D-Maltoside PDB codes: 1s5l(B), 2axt(B), 3bz1(B), 3bz2(B), 3kzi(B), 3prq(B), 3prr(B), 4fby(B), 4ixq(B), 4ixr(B), 4tnh(B), 4tni(B), 4tnj(B), 4tnk(B), 5h2f(B), 5zzn(B),
		7. Ligand: DGD × 32 Digalactosyl diacyl glycerol (dgdg) PDB codes: 2axt(B), 3bz1(B), 3bz2(B), 3kzi(B), 3prq(B), 3prr(B), 4fby(B), 4ixq(B), 4ixr(B), 4pbu(B), 4pj0(B), 4rvy(B), 4tnh(B), 4tni(B), 4tnj(B), 4tnk(B), 5e79(B), 5e7c(B), 5h2f(B), 5kaf(B), 5kai(B), 5mx2(B), 5tis(B), 5zzn(B).
		8. Ligand: UNL × 23 Unknown ligand PDB codes: 4pj0(B), 5h2f(B), 5kaf(B), 5kai(B), 5tis(B), 5zzn(B),
		9. Ligand: LHG × 22 1,2-Dipalmitoyl-Phosphatidyl-Glycerole PDB codes: 4pbu(B), 4pj0(B), 4rvy(B), 5e79(B), 5e7c(B), 5h2f(B), 5kaf(B), 5kai(B), 5mx2(B), 5tis(B), 5zzn(B),
		10. Ligand: HTG × 7 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 5h2f(B), 5zzn(B),
		11. Ligand: LFA × 7 Eicosane PDB codes: 5mx2(B),
		12. Ligand: MGE × 3 (1s)-2-(Alpha-L-Allopyranosyloxy)-1-[(Tridecanoyloxy) methyl]ethyl palmitate PDB codes: 2axt(B),
		13. Ligand: UNK × 3 PDB codes: 2axt(B),
		14. Ligand: SQD-SQD × 1 SQD=1,2-Di-O-Acyl-3-O-[6-Deoxy-6-Sulfo-Alpha-D- Glucopyranosyl]-Sn-Glycerol. PDB code: 4rvy(B).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: DMS × 1 dimethyl sulfoxide Dimethyl sulfoxide PDB code: 5h2f(B).
		2. Ligand: HTG × 1 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB code: 5zzn(B).
		3. Ligand: UNL × 1 Unknown ligand PDB code: 5h2f(B).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 4 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(B), 5zzn(B),
		2. Ligand: HTG × 1 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB code: 5h2f(B).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 3prq(B), 3prr(B).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: DMS × 5 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 3prq(B), 3prr(B), 5h2f(B), 5zzn(B).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5h2f(B), 5zzn(B).