Ligand clusters for UniProt code Q7SIB6

Ligand clusters for Q7SIB6: Serine hydroxymethyltransferase from Geobacillus stearothermophilus

		Top 6 (of 7) ligand clusters Cluster 1. 9 ligand types 42 ligands Cluster 2. 5 ligand types 5 ligands Cluster 3. 2 ligand types 23 ligands Cluster 4. 2 ligand types 11 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 2vgsA

Structures

PDB		Schematic diagram
2vgsA
2vgtA
2vmuA
2w7lA
2vmzA
		more ...

Cluster 1 contains 9 ligand types

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Ligand		Description
		1. Ligand: PLP × 10 pyridoxal phosphate Pyridoxal-5'-Phosphate PDB codes: 1kkj(A), 1yjz(A), 2vgs(A), 2vi8(A), 2vmn(A), 2vmr(A), 2vmv(A), 2vmy(A), 2w7d(A), 2w7i(A).
		2. Ligand: FFO × 1 levoleucovorin N-[4-({[(6s)-2-Amino-5-Formyl-4-Oxo-3,4,5,6, 7,8-Hexahydropteridin-6-Yl]methyl}amino) benzoyl]-L- Glutamic acid PDB code: 2vmy(A).
		3. Ligand: GLY × 1 glycine PDB code: 2vmy(A).
		4. Ligand: FON × 1 Folinic acid PDB code: 1kl2(A).
		5. Ligand: GLY-PLP × 14 PLP=Pyridoxal-5'-Phosphate. PDB codes: 2vgt(A), 2vgv(A), 2vgw(A), 2vi9(A), 2vib(A), 2vmo(A), 2vmq(A), 2vms(A), 2vmu(A), 2vmz(A), 2w7e(A), 2w7h(A), 2w7j(A), 2w7m(A).
		6. Ligand: SER-PLP × 7 PLP=Pyridoxal-5'-Phosphate. PDB codes: 2vgu(A), 2via(A), 2vmp(A), 2vmt(A), 2vmw(A), 2w7f(A), 2w7k(A).
		7. Ligand: PLP-ALO × 3 ALO=Allo-Threonine, PLP=Pyridoxal-5'-Phosphate. PDB codes: 2vmx(A), 2w7g(A), 2w7l(A).
		8. Ligand: PLP-GLY × 3 PLP=Pyridoxal-5'-Phosphate. PDB codes: 1kl1(A), 1kl2(A), 1yjs(A).
		9. Ligand: PLP-SER × 2 PLP=Pyridoxal-5'-Phosphate. PDB codes: 1kkp(A), 1yjy(A).

Cluster 2 contains 5 ligand types

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Ligand		Description
		1. Ligand: FFO × 1 levoleucovorin N-[4-({[(6s)-2-Amino-5-Formyl-4-Oxo-3,4,5,6, 7,8-Hexahydropteridin-6-Yl]methyl}amino) benzoyl]-L- Glutamic acid PDB code: 2vmy(A).
		2. Ligand: GLY × 1 glycine PDB code: 2vmy(A).
		3. Ligand: PLP × 1 pyridoxal phosphate Pyridoxal-5'-Phosphate PDB code: 2vmy(A).
		4. Ligand: FON × 1 Folinic acid PDB code: 1kl2(A).
		5. Ligand: PLP-GLY × 1 PLP=Pyridoxal-5'-Phosphate. PDB code: 1kl2(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: MPD × 22 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 2vgs(A), 2vi8(A), 2vgt(A), 2vgu(A), 2vgv(A), 2vgw(A), 2vi9(A), 2via(A), 2vib(A), 2vmn(A), 2vmo(A), 2vmp(A), 2vmq(A), 2vmt(A), 2vmv(A), 2vmw(A), 2vmx(A), 2w7d(A), 2w7e(A), 2w7f(A), 2w7g(A), 2w7h(A).
		2. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 2vmz(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: MPD × 10 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 2vi8(A), 2vi9(A), 2via(A), 2vib(A), 2vmn(A), 2vmo(A), 2vmp(A), 2vmq(A), 2vmw(A), 2w7f(A).
		2. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 2vmy(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 2vms(A), 2vmu(A).
		2. Ligand: MRD × 1 (4r)-2-Methylpentane-2,4-Diol PDB code: 2vmr(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 2vmq(A).