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Ligand clusters for UniProt code Q70SQ1

Ligand clusters for Q70SQ1: Ac-ChiA from Autographa californica nuclear polyhedrosis virus

6 ligand clusters
Cluster 1.
3 ligand types
4 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
2 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 5dezA  
JSmol
 

Structures

PDB   Schematic diagram
5dezA    
5df0A    

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAG × 2
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 5dez(A), 5df0(A).


 
2. Ligand: NAG-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code: 5dez(A).


 
3. Ligand: SN5-58Y × 1
SN5=2-Deoxy-2-(Ethanethioylamino)-Beta-D-Glucopyranose, 58Y=(2r,3ar,5r,6r,7r,7ar)-5-(Hydroxymethyl)-2- Methylhexahydro-3ah-Pyrano[3,2-D][1,3]thiazole-6,7-
Diol.
PDB code: 5df0(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG × 2
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 5dez(A), 5df0(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG × 2
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 5dez(A), 5df0(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 5df0(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 5df0(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 5df0(A).

 

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