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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code Q6P179

Ligand clusters for Q6P179: Endoplasmic reticulum aminopeptidase 2 from Homo sapiens

Top 6 (of 17) ligand clusters
Cluster 1.
10 ligand types
22 ligands
 Cluster 2.
5 ligand types
10 ligands
 Cluster 3.
5 ligand types
10 ligands
 Cluster 4.
4 ligand types
10 ligands
 Cluster 5.
3 ligand types
10 ligands
 Cluster 6.
2 ligand types
10 ligands
Representative protein: 5ab0A  
JSmol
 

Structures

PDB   Schematic diagram
5ab0A    
6ea4A    
5k1vA    
5ab2A    
5cu5A    
 more ...

 

 Cluster 1 contains 10 ligand types

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Ligand Description

_Zn
 
1. Metal: _ZN × 9
PDB codes: 3se6(A), 4e36(A), 4jbs(A), 5ab0(A), 5ab2(A), 5j6s(A), 5k1v(A), 6ea4(A).


 
2. Ligand: LYS × 3
l-lysine
PDB codes: 3se6(A), 4e36(A), 6ea4(A).


 
3. Ligand: GLY × 1
glycine
PDB code: 5ab2(A).


 
4. Ligand: MES × 3
2-(N-Morpholino)-Ethanesulfonic acid
PDB codes: 3se6(A), 4e36(A), 6ea4(A).


 
5. Ligand: 2X0-7GA-LYS-HIS-HIS-ALA-PHE-SER-PHE-LYN × 1
2X0=[(1r)-1-Amino-3-Phenylpropyl]phosphonic acid, 7GA=2,4-Dimethylpentanal, LYN=2,6-Diamino-Hexanoic acid amide.
PDB code: 5ab0(A).


 
6. Ligand: 6GA × 1
(2s)-N~1~-Benzyl-2-[(4-Fluorophenyl)methyl]-N~3~- Hydroxypropanediamide
PDB code: 5j6s(A).


 
7. Ligand: 6PX × 1
Methyl n-[4-Amino-3-(L-Arginylamino)benzene-1- Carbonyl]-L-Tyrosinate
PDB code: 5k1v(A).


 
8. Ligand: J2G × 1
4-Methoxy-3-{[2-(Piperidin-1-Yl)-4-(Trifluoromethyl) phenyl]sulfamoyl}benzoic acid
PDB code: 6ea4(A).


 
9. Ligand: P52 × 1
Nalpha-[(2s)-2-{[[(1r)-1-Amino-3- Phenylpropyl](hydroxy)phosphoryl]methyl}-4- Methylpentanoyl]-L-
Tryptophanamide
PDB code: 4jbs(A).


 
10. Ligand: PRO-GLY-ARG-ALA-PHE × 1
PDB code: 5ab2(A).

 

 Cluster 2 contains 5 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG-MAN-MAN × 5
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 3se6(A), 4e36(A), 4jbs(A), 5cu5(A), 5k1v(A).


 
2. Ligand: NAG-NAG-BMA-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5j6s(A), 6ea4(A).


 
3. Ligand: NAG-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code: 5k1v(B).


 
4. Ligand: NAG-NAG-BMA-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 5ab2(A).


 
5. Ligand: NAG-NAG-BMA-BMA-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 5ab0(A).

 

 Cluster 3 contains 5 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG × 6
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 3se6(A), 4e36(A), 4jbs(A), 5ab0(A), 5j6s(A), 5k1v(A).


 
2. Ligand: NAG-NAG-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 5ab2(A).


 
3. Ligand: NAG-NAG-BMA-MAN-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 6ea4(A).


 
4. Ligand: NAG-NAG-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 5cu5(A).


 
5. Ligand: NAG-NAG-MAN-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 5k1v(B).

 

 Cluster 4 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code: 5k1v(B).


 
2. Ligand: NAG-NAG × 5
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 3se6(A), 4e36(A), 4jbs(A), 5cu5(A), 5k1v(A).


 
3. Ligand: NAG-NAG-BMA × 3
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 5ab0(A), 5ab2(A), 5j6s(A).


 
4. Ligand: NAG-NAG-BMA-MAN-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 6ea4(A).

 

 Cluster 5 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAG × 7
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 3se6(A), 4e36(A), 4jbs(A), 5ab2(A), 5cu5(A), 5k1v(A),


 
2. Ligand: NAG-NAG × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 5j6s(A), 6ea4(A).


 
3. Ligand: NAG-NAG-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 5ab0(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG × 8
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 3se6(A), 4e36(A), 4jbs(A), 5cu5(A), 5j6s(A), 5k1v(A), 6ea4(A).


 
2. Ligand: NAG-NAG × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 5ab0(A), 5ab2(A).

 

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