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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code Q62765
Ligand clusters for Q62765: Neuroligin-1 from Rattus norvegicus
6 ligand clusters
Cluster 1.
2 ligand types
2 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
4 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3vkfA
Structures
PDB
Schematic diagram
3vkf
A
3vkf
B
3bix
A
3biw
A
Cluster 1 contains 2 ligand types
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Ligand
Description
1. Ligand:
NAG × 1
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB code:
3biw
(A).
2. Ligand:
NAG-NAG-BMA × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose.
PDB code:
3vkf
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAG × 2
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
3biw
(A),
3bix
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAG × 4
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes:
3biw
(A),
3bix
(A),
3vkf
(A),
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3bix
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3bix
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3bix
(A).