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Ligand clusters for UniProt code Q5SHE1

Ligand clusters for Q5SHE1: Cyclic pyranopterin monophosphate synthase from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Top 6 (of 8) ligand clusters
Cluster 1.
5 ligand types
8 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
3 ligands
Representative protein: 2ideA  
JSmol
 

Structures

PDB   Schematic diagram
2ideA    
3jqmA    
2iihA    
3jqkA    
3jqjA    

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3jqj(A).


 
2. Ligand: PO4 × 3
Phosphate ion
PDB codes: 2ide(A), 2iih(A), 3jqj(A).


 
3. Ligand: ACT × 2
Acetate ion
PDB codes: 3jqk(A),


 
4. Ligand: FLC × 1
Citrate anion
PDB code: 3jqm(A).


 
5. Ligand: GTP × 1
Guanosine-5'-Triphosphate
PDB code: 3jqm(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 3jqm(A).


 
2. Ligand: PGR × 1
R-1,2-Propanediol
PDB code: 3jqj(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 3jqm(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3jqm(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3jqm(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: PO4 × 3
Phosphate ion
PDB codes: 2ide(A), 3jqj(A), 3jqk(A).

 

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