Ligand clusters for UniProt code Q5H3Z2

Ligand clusters for Q5H3Z2: Peptide deformylase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN=def PE=1 SV=1

		Top 6 (of 12) ligand clusters Cluster 1. 19 ligand types 40 ligands Cluster 2. 1 ligand type 2 ligands Cluster 3. 2 ligand types 20 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 5cy7A

Structures

PDB		Schematic diagram
5cy7A
5cvpA
6ikyA
5cwyA
6il0A
		more ...

Cluster 1 contains 19 ligand types

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Ligand		Description
_Cd		1. Metal: _CD × 20 PDB codes: 4nt8(A), 5cp0(A), 5cpd(A), 5cvk(A), 5cvp(A), 5cvq(A), 5cwx(A), 5cwy(A), 5cx0(A), 5cxj(A), 5cy7(A), 5cy8(A), 5e5d(A), 6ikt(A), 6il2(A).
_Na		2. Metal: _NA × 2 PDB codes: 4nt8(A), 5cpd(A).
_Ni		3. Metal: _NI × 2 PDB codes: 6iky(A), 6il0(A).
		4. Ligand: 4WL × 1 4h-Thieno[3,2-B]pyrole-5-Carboxylic acid PDB code: 5cwy(A).
		5. Ligand: 56E × 1 Ethyl n-[(5-Methylthiophen-3-Yl)carbonyl]glycinate PDB code: 5cvk(A).
		6. Ligand: 56F × 1 1-(4-Chlorophenyl)-N-Methylmethanesulfonamide PDB code: 5cvp(A).
		7. Ligand: 56K × 1 3-(2-Methyl-1,3-Thiazol-4-Yl)aniline PDB code: 5cwx(A).
		8. Ligand: 56L × 1 5-(Propan-2-Yl)-2-Thioxodihydropyrimidine-4,6(1h,5h)- Dione PDB code: 5cx0(A).
		9. Ligand: 56T × 1 2-(Furan-2-Yl)ethanamine PDB code: 5cxj(A).
		10. Ligand: 56U × 1 2-(Difluoromethyl)-1h-Benzimidazole PDB code: 5cy7(A).
		11. Ligand: 56V × 1 (3r)-2,3-Dihydro[1,3]thiazolo[3,2-A]benzimidazol-3-Ol PDB code: 5cy8(A).
		12. Ligand: BB2 × 1 Actinonin PDB code: 5cvq(A).
		13. Ligand: FME-ALA × 1 FME=N-Formylmethionine. PDB code: 4nt8(A).
		14. Ligand: K1U × 1 (3r)-3-Benzyl-4-Oxo-4-[(2-Oxo-2-Phenylethyl) sulfanyl]butanoic acid PDB code: 6ikt(A).
		15. Ligand: K2U × 1 (3~{r},4~{r})-4-Oxidanyl-3-(Phenylmethyl)-4- (Phenylmethylsulfanyl)butanoic acid PDB code: 6iky(A).
		16. Ligand: K3U × 1 S-(2-Oxo-2-Phenylethyl) (2r)-2-Benzyl-4,4,4- Trifluorobutanethioate PDB code: 6il0(A).
		17. Ligand: LHY × 1 L-[(N-Hydroxyamino)carbonyl]phenylalanine PDB code: 6il2(A).
		18. Ligand: MET-ALA × 1 PDB code: 5cpd(A).
		19. Ligand: MET-ALA-SER × 1 PDB code: 5cp0(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4nt8(A), 5cpd(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: ACT × 11 Acetate ion PDB codes: 4nt8(A), 5cp0(A), 5cpd(A), 5cvk(A), 5cvq(A), 5cwx(A), 5cwy(A), 5cx0(A), 5cxj(A), 5cy7(A), 5cy8(A).
_Na		2. Metal: _NA × 9 PDB codes: 4nt8(A), 5cp0(A), 5cpd(A), 5cvk(A), 5cvp(A), 5cwy(A), 5cxj(A), 5cy7(A), 5cy8(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 5cp0(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 5cp0(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: ACT × 1 Acetate ion PDB code: 5cvp(A).