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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code Q54276
Ligand clusters for Q54276: Chitinase from Serratia marcescens
Top 6 (of 32) ligand clusters
Cluster 1.
12 ligand types
48 ligands
Cluster 2.
2 ligand types
15 ligands
Cluster 3.
2 ligand types
5 ligands
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
7 ligands
Cluster 6.
1 ligand type
6 ligands
Representative protein: 1e6pA
Structures
PDB
Schematic diagram
1e6p
A
1w1y
A
1e6r
A
1ur8
A
1w1t
A
more ...
Cluster 1 contains 12 ligand types
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Ligand
Description
1. Ligand:
GOL × 32
glycerin
Glycerol
PDB codes:
1e6p
(A),
1ur8
(A),
1ur9
(A),
1w1p
(A),
1w1t
(A),
1w1v
(A),
1w1y
(A),
2. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
1ur8
(A),
1ur9
(A),
3. Ligand:
TYP × 3
Cyclo-(L-Tyrosine-L-Proline) inhibitor
PDB codes:
1w1y
(A),
4. Ligand:
GDL-NAG × 2
GDL
=2-(Acetylamido)-2-Deoxy-D-Glucono-1,5-Lactone,
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes:
1ur8
(A),
1ur9
(A).
5. Ligand:
ALJ × 1
Cyclo-(L-Arginine-L-Proline) inhibitor
PDB code:
1w1v
(A).
6. Ligand:
AMI × 1
Allosamizoline
PDB code:
1e6r
(A).
7. Ligand:
CHQ × 1
Cyclo-(L-Histidine-L-Proline) inhibitor
PDB code:
1w1t
(A).
8. Ligand:
GIO × 1
Cyclo-(Glycine-L-Proline) inhibitor
PDB code:
1w1p
(A).
9. Ligand:
NAA-NAA × 1
NAA
=2-Acetamido-2-Deoxy-Beta-D-Allopyranose.
PDB code:
1e6r
(A).
10. Ligand:
NAG-NAG × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB code:
1e6z
(A).
11. Ligand:
NGO × 1
2-Methyl-4,5-Dihydro-(1,2-Dideoxy-Alpha-D- Glucopyranoso)[2,1-D]-1,3-Oxazole
PDB code:
1e6z
(A).
12. Ligand:
PHJ × 1
N-[(Aminooxy)carbonyl]-N-Phenylamine
PDB code:
1ur9
(A).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 14
glycerin
Glycerol
PDB codes:
1e6p
(A),
1ur8
(A),
1ur9
(A),
1w1p
(A),
1w1t
(A),
1w1v
(A),
1w1y
(A),
2. Ligand:
TYP × 1
Cyclo-(L-Tyrosine-L-Proline) inhibitor
PDB code:
1w1y
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
1ur8
(A),
1ur9
(A).
2. Ligand:
SO4 × 3
Sulfate ion
PDB codes:
1e6r
(A),
1ur9
(A),
1w1v
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
1ur9
(A).
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
1ur9
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 7
glycerin
Glycerol
PDB codes:
1e6p
(A),
1ur8
(A),
1ur9
(A),
1w1p
(A),
1w1t
(A),
1w1v
(A),
1w1y
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 6
glycerin
Glycerol
PDB codes:
1e6p
(A),
1ur9
(A),
1w1p
(A),
1w1t
(A),
1w1v
(A),
1w1y
(A).