Ligand clusters for UniProt code Q3JNW6

Ligand clusters for Q3JNW6: Catalase-peroxidase from Burkholderia pseudomallei (strain 1710b)

		Top 6 (of 13) ligand clusters Cluster 1. 5 ligand types 52 ligands Cluster 2. 1 ligand type 1 ligand Cluster 3. 2 ligand types 47 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 1 ligand type 5 ligands Cluster 6. 1 ligand type 5 ligands
Representative protein: 5kqiA

Structures

PDB		Schematic diagram
5kqiA
5sxtA
5v4oA
5sxsA
6cawA
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: HEM × 46 Protoporphyrin IX containing fe PDB codes: 5kq0(A), 5kq2(A), 5kq3(A), 5kq6(A), 5kqh(A), 5kqi(A), 5kqk(A), 5kqn(A), 5kqq(A), 5ksf(A), 5ksg(A), 5ksk(A), 5ksn(A), 5kt8(A), 5kt9(A), 5l02(A), 5sw4(A), 5sw5(A), 5sx1(A), 5sx2(A), 5sx3(A), 5sx6(A), 5sx7(A), 5sxq(A), 5sxr(A), 5sxs(A), 5sxt(A), 5sxw(A), 5sxx(A), 5syh(A), 5syi(A), 5syj(A), 5syk(A), 5syu(A), 5syv(A), 5syw(A), 5syx(A), 5syy(A), 5txq(A), 5v4o(A), 5v53(A), 6b9b(A), 6caw(A), 6cc6(A), 6cdq(A), 6cek(A).
		2. Ligand: ACT × 2 Acetate ion PDB codes: 5ksf(A), 5v53(A).
		3. Ligand: NIZ × 2 Pyridine-4-Carbohydrazide PDB codes: 5syi(A), 5syj(A).
		4. Ligand: HEM-CYN × 1 HEM=Protoporphyrin IX containing fe, CYN=Cyanide ion. PDB code: 5syl(A).
		5. Ligand: HP5 × 1 Peroxidized heme form 2 PDB code: 5l05(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: GLC-GLC × 1 GLC=Alpha-D-Glucopyranose. PDB code: 6b9b(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: MPD × 43 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 5kq0(A), 5kq2(A), 5kq3(A), 5kq6(A), 5kqh(A), 5kqi(A), 5kqk(A), 5kqn(A), 5kqq(A), 5ksf(A), 5ksg(A), 5ksk(A), 5ksn(A), 5kt8(A), 5kt9(A), 5l02(A), 5l05(A), 5sw4(A), 5sw5(A), 5sx1(A), 5sx2(A), 5sx3(A), 5sx6(A), 5sx7(A), 5sxq(A), 5sxt(A), 5sxx(A), 5syh(A), 5syi(A), 5syj(A), 5syl(A), 5syu(A), 5syv(A), 5syw(A), 5syx(A), 5syy(A), 5v4o(A), 5v53(A), 6b9b(A), 6caw(A), 6cc6(A), 6cdq(A), 6cek(A).
		2. Ligand: MRD × 4 (4r)-2-Methylpentane-2,4-Diol PDB codes: 5sxr(A), 5sxs(A), 5sxw(A), 5syk(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: TRS × 3 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 5sw5(A), 5sx6(A), 5sx7(A).
		2. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 5kt8(A), 5syj(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: NIZ × 5 Pyridine-4-Carbohydrazide PDB codes: 5ksn(A), 5sxq(A), 5sxt(A), 5syj(A), 6cdq(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: MPD × 5 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 5kq0(A), 5kq2(A), 5kqh(A), 5txq(A), 6cek(A).