Ligand clusters for UniProt code Q3J1A6

Ligand clusters for Q3J1A6: Reaction center protein M chain from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

		Top 6 (of 10) ligand clusters Cluster 1. 10 ligand types 59 ligands Cluster 2. 4 ligand types 7 ligands Cluster 3. 1 ligand type 5 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 2 ligand types 3 ligands
Representative protein: 4n7lM

Structures

PDB		Schematic diagram
4n7lM
5lriM
2wx5M
4in5M
4in6M

Cluster 1 contains 10 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4in5(M),
		2. Ligand: BCL × 16 Bacteriochlorophyll a PDB codes: 2wx5(M), 4in5(M), 4in6(M), 5lri(M),
		3. Ligand: LDA × 11 Lauryl dimethylamine-N-Oxide PDB codes: 2wx5(M), 4in5(M), 4in6(M), 4n7l(M), 5lri(M),
		4. Ligand: BPH × 8 Bacteriopheophytin a PDB codes: 2wx5(M), 4in5(M), 4in6(M), 5lri(M),
		5. Ligand: 2GO × 6 [Methyl 9-Acetyl-14-Ethyl-20-Hydroxy-4,8,13,18- Tetramethyl-3-{3-Oxo-3-[(3,7,11,15- Tetramethylhexadec- 2-En-1-Yl)oxy]propyl}-3,4,20,21-Tetradehydrophorbine- 21-Carboxylatato(2-)- Kappa~4~n~23~,N~24~,N~25~, N~26~]zinc PDB codes: 4n7l(M),
		6. Ligand: U10 × 6 Ubiquinone-10 PDB codes: 2wx5(M), 4in5(M), 4in6(M), 4n7l(M), 5lri(M),
		7. Ligand: PC1 × 3 1,2-Diacyl-Sn-Glycero-3-Phosphocholine PDB codes: 4in5(M), 4in6(M), 4n7l(M).
		8. Ligand: SPO × 3 Spheroidene PDB codes: 4in5(M), 4in6(M), 4n7l(M).
		9. Ligand: GGD × 2 Nonadec-10-Enoic acid 2-[3,4-Dihydroxy-6-Hydroxymethyl- 5-(3,4,5-Trihydroxy-6-Hydroxymethyl- Tetrahydro-Pyran- 2-Yloxy)-Tetrahydro-Pyran-2-Yloxy]-1-Octadec-9- Enoyloxymethyl-Ethyl ester PDB codes: 4in6(M), 4n7l(M).
		10. Ligand: SPN × 2 Speroidenone PDB codes: 2wx5(M), 5lri(M).

Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4n7l(M).
		2. Ligand: CDL × 4 Cardiolipin PDB codes: 2wx5(M), 4in6(M), 4n7l(M), 5lri(M).
		3. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 4in5(M).
		4. Ligand: PO4 × 1 Phosphate ion PDB code: 4in5(M).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: LDA × 5 Lauryl dimethylamine-N-Oxide PDB codes: 2wx5(M), 4in5(M), 4in6(M), 4n7l(M), 5lri(M).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 4in6(M).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: HTO × 1 Heptane-1,2,3-Triol PDB code: 2wx5(M).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 2 Phosphate ion PDB codes: 4in5(M), 4in6(M).
_Na		2. Metal: _NA × 1 PDB code: 2wx5(M).