Ligand clusters for UniProt code Q3J126

Ligand clusters for Q3J126: Cyclic di-GMP-binding protein from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

		Top 6 (of 7) ligand clusters Cluster 1. 4 ligand types 6 ligands Cluster 2. 3 ligand types 6 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 2 ligand types 4 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 5eiyB

Structures

PDB		Schematic diagram
5eiyB
5ej1B
4p00B
4p02B
5ejzB
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC × 2 BGC=Beta-D-Glucopyranose. PDB codes: 4p00(B), 4p02(B).
		2. Ligand: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC × 2 BGC=Beta-D-Glucopyranose. PDB codes: 4hg6(B), 5ej1(B).
		3. Ligand: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-SHG × 1 BGC=Beta-D-Glucopyranose, SHG=2-Deoxy-2-Fluoro-Beta-D-Glucopyranose. PDB code: 5ejz(B).
		4. Ligand: BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-BGC-GAL × 1 BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose. PDB code: 5eiy(B).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK × 4 PDB codes: 4p00(B), 4p02(B), 5eiy(B), 5ejz(B).
		2. Ligand: UNK-UNK-UNK × 1 PDB code: 5ej1(B).
		3. Ligand: UNK-UNK-UNK-UNK × 1 PDB code: 5ej1(B).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 4hg6(B).
		2. Ligand: XP5 × 1 (4s,7r)-7-(Heptanoyloxy)-4-Hydroxy-N,N,N-Trimethyl-10- Oxo-3,5,9-Trioxa-4-Phosphahexadecan-1- Aminium 4-Oxide PDB code: 5ej1(B).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PLC × 3 Diundecyl phosphatidyl choline PDB codes: 4p02(B), 5ejz(B).
		2. Ligand: UND × 1 Undecane PDB code: 5ejz(B).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 4hg6(B).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: LDA × 1 Lauryl dimethylamine-N-Oxide PDB code: 5eiy(B).