Ligand clusters for UniProt code Q309D1

Ligand clusters for Q309D1: Lectin PVL (Fragment) from Lacrymaria velutina

		Top 6 (of 15) ligand clusters Cluster 1. 5 ligand types 5 ligands Cluster 2. 4 ligand types 4 ligands Cluster 3. 6 ligand types 6 ligands Cluster 4. 4 ligand types 5 ligands Cluster 5. 4 ligand types 4 ligands Cluster 6. 4 ligand types 5 ligands
Representative protein: 2bwmA

Structures

PDB		Schematic diagram
2bwmA
4up4A
2bwrA
2c25A
2c4dA

Cluster 1 contains 5 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file. Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 2c4d(A).
		2. Ligand: GAL-NAG × 1 GAL=Beta-D-Galactopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 4up4(A).
		3. Ligand: SIA × 1 N-Acetyl-Alpha-Neuraminic acid PDB code: 2c25(A).
		4. Ligand: SNG × 1 Methyl 2-Acetamido-2-Deoxy-1-Seleno-Beta-D- Glucopyranoside PDB code: 2bwm(A).
		5. Ligand: SO4 × 1 Sulfate ion PDB code: 2bwr(A).

Cluster 2 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 2c4d(A).
		2. Ligand: GAL-NAG × 1 GAL=Beta-D-Galactopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 4up4(A).
		3. Ligand: SIA × 1 N-Acetyl-Alpha-Neuraminic acid PDB code: 2c25(A).
		4. Ligand: SNG × 1 Methyl 2-Acetamido-2-Deoxy-1-Seleno-Beta-D- Glucopyranoside PDB code: 2bwm(A).

Cluster 3 contains 6 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 2c4d(A).
		2. Ligand: GAL-NAG × 1 GAL=Beta-D-Galactopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 4up4(A).
		3. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 2bwr(A).
		4. Ligand: SNG × 1 Methyl 2-Acetamido-2-Deoxy-1-Seleno-Beta-D- Glucopyranoside PDB code: 2bwm(A).
		5. Ligand: SO4 × 1 Sulfate ion PDB code: 2c25(A).
_Cl		6. Metal: _CL × 1 PDB code: 2bwr(A).

Cluster 4 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 2 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 2c4d(A), 4up4(A).
		2. Ligand: NDG × 1 2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose PDB code: 4up4(A).
		3. Ligand: SIA × 1 N-Acetyl-Alpha-Neuraminic acid PDB code: 2c25(A).
		4. Ligand: SNG × 1 Methyl 2-Acetamido-2-Deoxy-1-Seleno-Beta-D- Glucopyranoside PDB code: 2bwm(A).

Cluster 5 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 2c4d(A).
		2. Ligand: GAL-NAG × 1 GAL=Beta-D-Galactopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 4up4(A).
		3. Ligand: SNG × 1 Methyl 2-Acetamido-2-Deoxy-1-Seleno-Beta-D- Glucopyranoside PDB code: 2bwm(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 2bwr(A).

Cluster 6 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 2bwm(A).
		2. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 2c4d(A).
		3. Ligand: SO4 × 2 Sulfate ion PDB codes: 2bwm(A), 2bwr(A).
		4. Ligand: GAL-NAG × 1 GAL=Beta-D-Galactopyranose, NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB code: 4up4(A).