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Ligand clusters for UniProt code Q2N0S6

Ligand clusters for Q2N0S6: Envelope glycoprotein gp160 from Human immunodeficiency virus 1

Top 6 (of 10) ligand clusters
Cluster 1.
20 ligand types
729 ligands
 Cluster 2.
16 ligand types
298 ligands
 Cluster 3.
13 ligand types
133 ligands
 Cluster 4.
9 ligand types
161 ligands
 Cluster 5.
6 ligand types
6 ligands
 Cluster 6.
4 ligand types
12 ligands
Representative protein: 6b0nG  
JSmol
 

Structures

PDB   Schematic diagram
6b0nG    
6p62A    
6marA    
6ornG    
5t3xG    
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 Cluster 1 contains 20 ligand types

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Ligand Description


 
1. Ligand: NAG × 261
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 4nco(A), 4zmj(G), 5c7k(C), 5cez(G), 5cjx(K), 5d9q(G), 5fyl(G), 5i8h(A), 5js9(C), 5jsa(C), 5t3s(G), 5t3x(G), 5t3z(G), 5utf(G), 5uty(G), 5v8l(A), 5v8m(A), 5viy(D), 5w6d(G), 5wdu(G), 6b0n(G), 6ch7(G), 6ch8(G), 6dfg(A), 6dfh(A), 6did(A), 6mar(A), 6mn7(A), 6mtj(G), 6mtn(G), 6mu6(G), 6mu7(G), 6mu8(G), 6nf5(A), 6nfc(A), 6nm6(G), 6nnf(G), 6nnj(G), 6orn(G), 6oro(B), 6orp(B), 6orq(B), 6oz4(G), 6ozc(A), 6p62(A), 6pw6(A), 6u0l(A), 6u0n(A), 6udk(G), 6utk(G), 6v0r(A), 6v6w(G), 6v8x(A), 6v8z(A), 6vi0(G), 6vkn(A), 6vlr(A), 6vn0(A), 6vo0(A), 6vo1(A), 6w03(G), 6x9r(A), 6x9s(A), 6x9t(A), 6x9u(A), 6x9v(A), 6xrt(G), 7kde(E), 7ll1(A), 7ll2(A), 7lo6(A), 7lok(C).


 
2. Ligand: NAG-NAG × 218
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 4zmj(G), 5c7k(C), 5cez(G), 5cjx(G), 5d9q(G), 5fyl(G), 5i8h(A), 5js9(C), 5jsa(C), 5t3s(G), 5t3x(G), 5t3z(G), 5utf(G), 5uty(G), 5v7j(G), 5v8l(A), 5v8m(A), 5viy(D), 5w6d(G), 5wdu(G), 6b0n(G), 6dfg(A), 6dfh(A), 6did(A), 6mar(A), 6mn7(A), 6mtj(G), 6mtn(G), 6mu6(G), 6mu7(G), 6mu8(G), 6nf5(A), 6nfc(A), 6nm6(G), 6nnf(G), 6nnj(G), 6opa(G), 6orn(G), 6oro(B), 6orp(B), 6orq(B), 6oz4(G), 6ozc(A), 6p62(A), 6pw6(A), 6u0l(A), 6u0n(A), 6udk(G), 6utk(G), 6v0r(A), 6v6w(G), 6v8x(A), 6v8z(A), 6vi0(G), 6vkn(A), 6vlr(A), 6vn0(A), 6vo0(A), 6vo1(A), 6w03(G), 6x9r(A), 6x9s(A), 6x9t(A), 6x9u(A), 6x9v(A), 6xrt(G), 7kde(E), 7ll2(A), 7lo6(A).


 
3. Ligand: NAG-NAG-BMA × 57
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 5c7k(C), 5cjx(K), 5fyl(G), 5i8h(A), 5js9(C), 5jsa(C), 5t3x(G), 5t3z(G), 5utf(G), 5v7j(G), 5v8l(A), 5viy(D), 5wdu(G), 6b0n(G), 6ch7(G), 6ch8(G), 6dfg(A), 6mar(A), 6mn7(A), 6mtj(G), 6mtn(G), 6mu6(G), 6mu7(G), 6mu8(G), 6opa(G), 6orn(G), 6orp(B), 6oz4(G), 6utk(G), 6v0r(A), 6v8x(A), 6vi0(G), 6vo0(A), 7kde(E), 7ll1(A), 7ll2(A),


 
4. Ligand: NAG-NAG-BMA-MAN × 39
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5cez(G), 5d9q(G), 5i8h(A), 5t3s(G), 5uty(G), 5v8m(A), 5viy(D), 5w6d(G), 5wdu(G), 6b0n(G), 6ch7(G), 6ch8(G), 6dfg(A), 6did(A), 6nfc(A), 6nm6(G), 6nnf(G), 6nnj(G), 6opa(G), 6oro(B), 6oz4(G), 6p62(A), 6pw6(A), 6utk(G), 6v6w(G), 6v8x(A), 6v8z(A), 6vi0(G), 6w03(G), 6x9r(A), 6x9s(A), 6x9t(A), 6x9u(A), 6x9v(A).


 
5. Ligand: NAG-NAG-BMA-MAN-MAN × 35
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5c7k(C), 5d9q(G), 5js9(C), 5jsa(C), 5t3s(G), 5t3x(G), 5t3z(G), 5thr(D), 5v8l(A), 5wdu(G), 6b0n(G), 6ch8(G), 6dfh(A), 6mn7(A), 6nf5(A), 6opa(G), 6orp(B), 6orq(B), 6ozc(A), 6u0l(A), 6u0n(A), 6utk(G), 6vlr(A), 6vn0(A), 6xrt(G), 7ll2(A), 7lo6(A).


 
6. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 32
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 4nco(A), 5c7k(C), 5cez(G), 5d9q(G), 5fyl(G), 5jsa(C), 5t3s(G), 5t3x(G), 5t3z(G), 5v7j(G), 5v8m(A), 5viy(D), 6ch7(G), 6ch8(G), 6dfh(A), 6did(A), 6e5p(A), 6mn7(A), 6orn(G), 6oz4(G), 6ozc(A), 7kde(E).


 
7. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 31
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 4zmj(G), 5fyl(G), 5i8h(A), 5utf(G), 5uty(G), 5v7j(G), 5v8l(A), 5v8m(A), 5wdu(G), 6ch7(G), 6ch8(G), 6dfg(A), 6did(A), 6mar(A), 6nf5(A), 6orn(G), 6oro(B), 6ozc(A), 6udk(G), 6utk(G), 6v0r(A), 6vi0(G), 6vkn(A), 6vlr(A), 6vo1(A), 7lok(C).


 
8. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 25
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5c7k(C), 5d9q(G), 5fyl(G), 5i8h(A), 5js9(C), 5jsa(C), 5t3s(G), 5t3x(G), 5t3z(G), 5utf(G), 5uty(G), 5v7j(G), 5w6d(G), 6dfg(A), 6mn7(A), 6mtj(G), 6mtn(G), 6mu6(G), 6mu7(G), 6mu8(G), 6nm6(G), 6nnf(G), 6nnj(G), 6utk(G), 6w03(G).


 
9. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 13
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5fyl(G), 5js9(C), 5v7j(G), 5w6d(G), 5wdu(G), 6b0n(G), 6ch8(G), 6ozc(A), 6udk(G), 6v8z(A).


 
10. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 8
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 4nco(A), 5c7k(C), 5cez(G), 5jsa(C), 6ch7(G), 6ch8(G), 6ozc(A),


 
11. Ligand: BMA-MAN-MAN-MAN × 1
BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 6b0n(G).


 
12. Ligand: NAG-NAG-BMA-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 5t3z(G).


 
13. Ligand: NAG-NAG-BMA-MAN-MAN-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 5t3x(G).


 
14. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 6utk(G).


 
15. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose.
PDB code: 5t3z(G).


 
16. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-SIA-MAN-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid.
PDB code: 5t3x(G).


 
17. Ligand: NAG-NAG-BMA-MAN-NAG-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 5t3z(G).


 
18. Ligand: NAG-NAG-BMA-MAN-NAG-MAN-NAG × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 5t3x(G).


 
19. Ligand: NAG-NAG-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB code: 6v0r(A).


 
20. Ligand: SO4 × 1
Sulfate ion
PDB code: 5c7k(C).

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 Cluster 2 contains 16 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 197
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 4nco(A), 4zmj(G), 5c7k(C), 5cez(G), 5cjx(B), 5d9q(G), 5fyl(G), 5i8h(A), 5js9(C), 5jsa(D), 5t3s(G), 5t3z(G), 5utf(G), 5uty(G), 5v7j(G), 5v8l(A), 5v8m(A), 5viy(D), 5w6d(B), 5wdu(G), 6b0n(G), 6ch8(G), 6dfg(A), 6did(A), 6mar(A), 6mtj(G), 6mtn(G), 6mu6(G), 6mu7(G), 6mu8(G), 6nf5(A), 6nfc(A), 6nm6(G), 6nnf(G), 6nnj(G), 6opa(B), 6orn(G), 6oro(B), 6orp(B), 6orq(B), 6oz4(G), 6ozc(A), 6pw6(A), 6u0l(A), 6u0n(A), 6udk(G), 6utk(G), 6v0r(A), 6v6w(G), 6v8x(A), 6v8z(A), 6vi0(G), 6vkn(A), 6vlr(A), 6vn0(A), 6vo0(A), 6vo1(A), 6w03(G), 6x9r(A), 6x9s(A), 6x9t(A), 6x9u(A), 6x9v(A), 6xrt(G), 7kde(A), 7ll1(A), 7ll2(A), 7lo6(A),


 
2. Ligand: NAG-NAG × 41
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 5cez(G), 5i8h(A), 5t3s(G), 5t3x(G), 5t3z(G), 5utf(G), 5uty(G), 5w6d(G), 6ch7(G), 6dfg(A), 6dfh(A), 6mn7(A), 6nf5(A), 6nfc(A), 6nm6(G), 6nnf(G), 6nnj(G), 6opa(G), 6orq(B), 6oz4(G), 6p62(A), 6pw6(A), 6u0l(A), 6u0n(A), 6utk(G), 6v0r(A), 6vkn(A), 6vlr(B), 6vn0(A), 6vo1(A), 6w03(G), 6xrt(G).


 
3. Ligand: NAG-NAG-BMA × 15
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 5fyl(B), 5t3z(B), 5v7j(B), 6ch7(G), 6mn7(A), 6orn(G), 6orp(B), 6orq(B), 6udk(G), 6v8x(A), 6v8z(A), 7kde(E), 7ll1(A), 7ll2(A).


 
4. Ligand: NAG-NAG-BMA-MAN-MAN × 7
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5cjx(B), 5fyl(G), 5thr(D), 5viy(A), 6b0n(G), 6opa(G).


 
5. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 7
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5c7k(D), 5js9(C), 5jsa(C), 5v8m(A), 6ch8(G), 6did(A), 6vi0(G).


 
6. Ligand: NAG-NAG-BMA-MAN × 6
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5js9(D), 5jsa(D), 5thr(D), 5viy(D), 6ch8(G).


 
7. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 5
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5v7j(G), 5v8l(A), 5wdu(G), 6p62(A), 7ll2(A).


 
8. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 4
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5cjx(G), 6ch7(G), 7ll1(A).


 
9. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 4
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5c7k(C), 5d9q(G), 5js9(C), 5jsa(C).


 
10. Ligand: NAG-FUC × 3
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB codes: 5t3x(B), 5t3z(B), 6v0r(B).


 
11. Ligand: NAG-NAG-BMA-FUC × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 5t3x(B), 7kde(A).


 
12. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5c7k(C), 7kde(E).


 
13. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5cjx(G),


 
14. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose.
PDB code: 5t3z(G).


 
15. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-SIA-NAG-MAN-NAG-GAL-SIA-NAG-GAL-NAG-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose, SIA=N-Acetyl-Alpha-Neuraminic acid.
PDB code: 5t3x(G).


 
16. Ligand: NAG-NAG-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB code: 6vkn(B).

 

 Cluster 3 contains 13 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 40
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 4nco(A), 4zmj(G), 5c7k(C), 5cez(G), 5js9(C), 5t3s(G), 5w6d(G), 5wdu(G), 6b0n(G), 6dfg(A), 6dfh(A), 6mtj(G), 6mtn(G), 6mu6(G), 6mu7(G), 6mu8(G), 6nf5(A), 6nfc(A), 6nm6(G), 6nnf(G), 6nnj(G), 6orn(G), 6orq(B), 6ozc(A), 6p62(A), 6udk(G), 6v0r(A), 6v6w(G), 6vi0(G), 6vkn(A), 6vlr(A), 6w03(G), 6x9r(A), 6x9s(A), 6x9t(A), 6x9u(A), 6x9v(A), 7kde(E).


 
2. Ligand: NAG-NAG × 39
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 5c7k(C), 5d9q(G), 5i8h(A), 5js9(C), 5jsa(C), 5utf(G), 5uty(G), 5v8l(A), 5v8m(A), 6dfg(A), 6dfh(A), 6did(A), 6mar(A), 6nf5(A), 6nfc(A), 6orp(B), 6oz4(G), 6ozc(A), 6p62(A), 6pw6(A), 6v8x(A), 6v8z(A), 6vi0(G), 6vkn(A), 6vn0(A), 6vo0(A), 6vo1(A), 6x9r(A), 6x9s(A), 6x9t(A), 6x9u(A), 6x9v(A).


 
3. Ligand: NAG-NAG-BMA × 24
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 5jsa(C), 5w6d(G), 6b0n(G), 6ch7(G), 6mn7(A), 6mtj(G), 6mtn(G), 6mu6(G), 6mu7(G), 6mu8(G), 6opa(G), 6oro(B), 6oz4(G), 6utk(G), 6v0r(A), 6v8x(A), 6vlr(A), 6vo1(A), 7ll1(A), 7ll2(A),


 
4. Ligand: NAG-NAG-BMA-MAN-MAN × 15
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5cez(G), 5d9q(G), 5i8h(A), 5t3z(G), 5utf(G), 5uty(G), 5viy(D), 5wdu(G), 6ch8(G), 6nm6(G), 6nnf(G), 6nnj(G), 6w03(G), 6xrt(G).


 
5. Ligand: NAG-NAG-BMA-MAN × 3
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5t3s(G), 6utk(G), 7kde(E).


 
6. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 3
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 4nco(A), 6b0n(G), 6ch8(G).


 
7. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5v7j(G), 6xrt(G).


 
8. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5fyl(G), 5v7j(G).


 
9. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 5fyl(G).


 
10. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-GAL-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose.
PDB code: 5t3x(G).


 
11. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-NAG-MAN-NAG-GAL-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose.
PDB code: 5t3z(G).


 
12. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-NAG-MAN-NAG-GAL-NAG-GAL-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, GAL=Beta-D-Galactopyranose.
PDB code: 5t3x(G).


 
13. Ligand: NAG-NAG-BMA-MAN-NAG-MAN-MAN-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose.
PDB code: 6ch7(G).

 

 Cluster 4 contains 9 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 87
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 4nco(A), 4zmj(B), 5c7k(C), 5cez(B), 5fyl(B), 5i8h(B), 5t3s(B), 5utf(B), 5uty(B), 5v7j(B), 5v8l(B), 5wdu(G), 6b0n(G), 6ch7(G), 6mtj(B), 6mtn(B), 6mu7(B), 6nf5(A), 6nfc(A), 6nm6(B), 6opa(G), 6orn(C), 6oro(A), 6orp(A), 6orq(A), 6oz4(B), 6ozc(B), 6pw6(B), 6u0l(A), 6u0n(A), 6udk(G), 6v0r(B), 6v6w(G), 6vi0(B), 6vkn(B), 6vn0(B), 6vo0(A), 6x9r(A), 6x9s(A), 6x9t(A), 6x9u(A), 6x9v(A), 7kde(A), 7lo6(F).


 
2. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 22
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5cez(G), 5uty(B), 6mtj(B), 6mtn(B), 6mu6(B), 6mu7(B), 6mu8(B), 6nm6(B), 6nnf(B), 6nnj(B), 6w03(B),


 
3. Ligand: NAG-NAG × 19
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 5t3z(B), 5v8l(A), 5viy(A), 6mar(A), 6pw6(A), 6v0r(A), 6v8x(A), 6v8z(A), 6vkn(A), 6vlr(A), 6vo1(A), 6xrt(G).


 
4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 14
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5fyl(B), 5i8h(A), 5t3s(G), 5v7j(G), 5w6d(G), 6ch8(G), 6opa(G), 6utk(G).


 
5. Ligand: NAG-NAG-BMA × 7
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB codes: 5v8m(A), 6ch8(G), 6did(A), 6mn7(A), 7ll1(A), 7ll2(A).


 
6. Ligand: NAG-NAG-BMA-MAN-MAN × 7
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5d9q(G), 5wdu(G), 6v6w(G), 6vn0(A),


 
7. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB codes: 5utf(G),


 
8. Ligand: NAG-NAG-FUC × 2
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose.
PDB codes: 5t3x(B),


 
9. Ligand: NAG-NAG-BMA-MAN-NAG-GAL-MAN-FUC × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose, GAL=Beta-D-Galactopyranose.
PDB code: 6ch7(G).

 

 Cluster 5 contains 6 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: 5VG × 1
~{N}'-[(1~{r},2~{r})-2-(Carbamimidamidomethyl)-5- (Methylaminomethyl)-2,3-Dihydro-1~{h}-Inden-1-
Yl]- ~{N}-(4-Chloranyl-3-Fluoranyl-Phenyl)ethanediamide
PDB code: 7lo6(A).


 
2. Ligand: 83G × 1
1-[(2r)-4-(Benzenecarbonyl)-2-Methylpiperazin-1-Yl]-2- (4-Methoxy-1h-Pyrrolo[2,3-B]pyridin-3-
Yl)ethane-1,2- Dione
PDB code: 6mtj(G).


 
3. Ligand: JYJ × 1
{4-[1-(3-Chlorophenyl)cyclopropane-1- Carbonyl]piperazin-1-Yl}(thiophen-3-Yl)methanone
PDB code: 6mtn(G).


 
4. Ligand: JYS × 1
1-[4-(Benzenecarbonyl)piperazin-1-Yl]-2-(4-Bromo-7- Fluoro-1h-Indol-3-Yl)ethane-1,2-Dione
PDB code: 6mu8(G).


 
5. Ligand: JYV × 1
(2r)-{1-[{7-[2-({[3-(Dimethylamino)propyl](methyl) amino}methyl)-1,3-Thiazol-4-Yl]-4-Methoxy-1h-
Pyrrolo[2,3-C]pyridin-3-Yl}(oxo)acetyl]piperidin-4- Yl}(phenyl)acetonitrile
PDB code: 6mu6(G).


 
6. Ligand: JYY × 1
4-{3-[{4-[(R)-Cyano(phenyl)methyl]piperidin-1-Yl}(oxo) acetyl]-4-Methoxy-1h-Pyrrolo[2,3-C]pyridin-
7-Yl}-N-(2- Hydroxyethyl)-1,3-Thiazole-2-Carboxamide
PDB code: 6mu7(G).

 

 Cluster 6 contains 4 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: NAG × 5
n-acetylglucosamine
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
PDB codes: 4nco(A), 6ozc(A), 6v0r(A), 6vkn(A), 6vlr(A).


 
2. Ligand: NAG-NAG × 5
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose.
PDB codes: 6mar(A), 6nfc(A), 6oro(B), 6v8x(A), 6vn0(A).


 
3. Ligand: NAG-NAG-BMA × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose.
PDB code: 7ll2(A).


 
4. Ligand: NAG-NAG-BMA-MAN × 1
NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose.
PDB code: 6pw6(A).

 

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