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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code Q1XGK3
Ligand clusters for Q1XGK3: 4-oxalocrotonate decarboxylase NahK from Pseudomonas putida
Top 6 (of 22) ligand clusters
Cluster 1.
5 ligand types
12 ligands
Cluster 2.
1 ligand type
2 ligands
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
2 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 5d2fA
Structures
PDB
Schematic diagram
5d2f
A
5d2j
A
5d2k
A
5d2h
A
5d2g
A
more ...
Cluster 1 contains 5 ligand types
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Ligand
Description
1. Ligand:
EDO × 7
1,2-Ethanediol
PDB codes:
5d2f
(A),
5d2g
(A),
5d2h
(A),
5d2i
(A),
2. Ligand:
ACT × 2
Acetate ion
PDB codes:
5d2i
(A),
3. Ligand:
0L1 × 1
Hexanedioic acid
PDB code:
5d2j
(A).
4. Ligand:
AKG × 1
2-Oxoglutaric acid
PDB code:
5d2h
(A).
5. Ligand:
OOG × 1
2-Oxoadipic acid
PDB code:
5d2k
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 2
Sulfate ion
PDB codes:
5d2g
(A),
5d2h
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 6
1,2-Ethanediol
PDB codes:
5d2f
(A),
5d2g
(A),
5d2h
(A),
5d2j
(A),
5d2k
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
5d2f
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
5d2f
(A),
5d2h
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
5d2f
(A).