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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code Q16651
Ligand clusters for Q16651: Prostasin from Homo sapiens
Top 6 (of 10) ligand clusters
Cluster 1.
8 ligand types
8 ligands
Cluster 2.
2 ligand types
2 ligands
Cluster 3.
2 ligand types
2 ligands
Cluster 4.
1 ligand type
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3e0nB
Structures
PDB
Schematic diagram
3e0n
B
3gyl
B
3dfj
A
3dfl
A
3fvf
B
more ...
Cluster 1 contains 8 ligand types
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Ligand
Description
1. Ligand:
DMS × 1
dimethyl sulfoxide
Dimethyl sulfoxide
PDB code:
3fvf
(B).
2. Ligand:
1JZ × 1
1-[4-(Hydroxymethyl)phenyl]guanidine
PDB code:
3fvf
(B).
3. Ligand:
B3C × 1
Benzyl [(1r)-1-({(2s,4r)-2-({(1s)-5-Amino-1-[(S)-1,3- Benzoxazol-2-
Yl(hydroxy)methyl]pentyl}carbamoyl)-4- [(4-Methylbenzyl)oxy]pyrrolidin-1-Yl}carbonyl)-3-
Phenylpropyl]carbamate
PDB code:
3e0p
(B).
4. Ligand:
B4C × 1
Benzyl [(1s)-5-Amino-1-{[(1s)-1-({(1s)-5-Amino-1-[(S)- 1,3-Benzoxazol-2-
Yl(hydroxy)methyl]pentyl}carbamoyl)- 3-Phenylpropyl]carbamoyl}pentyl]carbamate
PDB code:
3e16
(B).
5. Ligand:
DPN-PHE-ARM × 1
DPN
=D-Phenylalanine,
ARM
=Deoxy-Methyl-Arginine.
PDB code:
3e0n
(B).
6. Ligand:
GBS × 1
4-Guanidinobenzoic acid
PDB code:
3dfl
(A).
7. Ligand:
SO4 × 1
Sulfate ion
PDB code:
3e0n
(B).
_Ca
8. Metal:
_CA × 1
PDB code:
3gyl
(B).
Cluster 2 contains 2 ligand types
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Ligand
Description
1. Ligand:
DMS × 1
dimethyl sulfoxide
Dimethyl sulfoxide
PDB code:
3e16
(B).
2. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3e0n
(B).
Cluster 3 contains 2 ligand types
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Ligand
Description
1. Ligand:
DMS × 1
dimethyl sulfoxide
Dimethyl sulfoxide
PDB code:
3fvf
(B).
2. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3e1x
(B).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 2
glycerin
Glycerol
PDB codes:
3e0n
(B),
3gyl
(B).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3e0n
(B).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
GOL × 1
glycerin
Glycerol
PDB code:
3e0p
(B).