Ligand clusters for UniProt code Q07817

Ligand clusters for Q07817: Bcl-2-like protein 1 from Homo sapiens

		Top 6 (of 27) ligand clusters Cluster 1. 49 ligand types 179 ligands Cluster 2. 4 ligand types 5 ligands Cluster 3. 3 ligand types 4 ligands Cluster 4. 3 ligand types 4 ligands Cluster 5. 2 ligand types 3 ligands Cluster 6. 2 ligand types 3 ligands
Representative protein: 6lhdB

Structures

PDB		Schematic diagram
6lhdB
6lhdA
3spfA
1ysgA
1ysiA
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Cluster 1 contains 49 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 12 glycerin Glycerol PDB codes: 2yq6(A), 2yq7(A), 3spf(A), 5fmk(A),
		2. Ligand: LBM × 4 venetoclax 4-{4-[(4'-Chloro-5,5-Dimethyl[3,4,5,6-Tetrahydro[1,1'- Biphenyl]]-2-Yl)methyl]piperazin-1-Yl}-N- [(3-Nitro-4- {[(Oxan-4-Yl)methyl]amino}phenyl)sulfonyl]-2-[(1h- Pyrrolo[2,3-B]pyridin-5- Yl)oxy]benzamide PDB codes: 6o0k(A), 6o0l(A), 6o0m(A), 6o0p(A).
_Zn		3. Metal: _ZN × 3 PDB codes: 3sp7(A),
		4. Ligand: EDO × 61 1,2-Ethanediol PDB codes: 3fdm(A), 3inq(A), 3zln(A), 3zlr(A), 4bpk(A), 4c52(A), 4c5d(A), 4cin(A), 4tuh(A), 5fmj(A), 5vx3(A), 6uvc(A), 6uvd(B), 6uve(A), 6uvf(A), 6uvg(A).
		5. Ligand: SO4 × 28 Sulfate ion PDB codes: 3zln(A), 3zlr(A), 4a1u(A), 4c52(A), 4c5d(A), 6st2(A), 6uvd(A), 6uvf(A), 6uvg(A), 6uvh(A), 6yli(A), 7ca4(A),
		6. Ligand: PEG × 7 Di(hydroxyethyl)ether PDB codes: 6o0l(A), 6o0m(A), 6o0p(A),
		7. Ligand: ACT × 4 Acetate ion PDB codes: 3sp7(A), 4tuh(A), 6qgk(A).
_Cd		8. Metal: _CD × 4 PDB codes: 4bpk(A),
		9. Ligand: 398 × 2 N,N-Dibutyl-4-Chloranyl-1-[2-(3,4-Dihydro-1h- Isoquinolin-2-Ylcarbonyl)-4-[(7- Iodanylnaphthalen- 2-Yl)sulfonylcarbamoyl]phenyl]-5-Met pyrazole-3-Carboxamide PDB codes: 4aq3(A),
		10. Ligand: 43B × 2 3-Nitro-N-{4-[2-(2-Phenylethyl)-1,3-Benzothiazol-5- Yl]benzoyl}-4-{[2- (Phenylsulfanyl) ethyl]amino}benzenesulfonamide PDB codes: 1ysn(A), 2o1y(A).
		11. Ligand: BCT × 2 Bicarbonate ion PDB codes: 4z9v(A),
		12. Ligand: EPE × 2 4-(2-Hydroxyethyl)-1-Piperazine ethanesulfonic acid PDB codes: 4cin(A),
		13. Ligand: F3Q × 2 ~{N}-(4-Hydroxyphenyl)-3-[6-[[(3~{s})-3-(Morpholin-4- Ylmethyl)-3,4-Dihydro-1~{h}-Isoquinolin-2- Yl]carbonyl]-1,3-Benzodioxol-5-Yl]-~{N}-Phenyl-5,6,7, 8-Tetrahydroindolizine-1-Carboxamide PDB codes: 6gl8(A), 6o0o(A).
		14. Ligand: H1I × 2 N-(3-(5-(1-(2-(Benzo[d]thiazol-2-Yl) hydrazono)ethyl)furan-2-Yl)phenylsulfonyl)-6- Phenylhexanamide PDB codes: 3zk6(A),
		15. Ligand: IMD × 2 Imidazole PDB codes: 4ehr(A), 4qve(A).
		16. Ligand: KBH × 2 4-(4-Fluorophenyl)-3-Fluorosulfonyl-Benzoic acid PDB codes: 6rnu(A),
		17. Ligand: N3C × 2 4-{4-[(4'-Chlorobiphenyl-2-Yl)methyl]piperazin-1-Yl}-N- {[4-({(1r)-3-(Dimethylamino)-1- [(Phenylthio) methyl]propyl}amino)-3-Nitrophenyl]sulfonyl}benzamide PDB codes: 2yxj(A),
		18. Ligand: QHP × 2 (R)-2-(3-([1,1'-Biphenyl]-4-Carbonyl)-3-(4- Methylbenzyl)ureido)-3-(((3r,5r,7r)-Adamantan-1- Ylmethyl)sulfonyl)propanoic acid PDB codes: 6uvg(A),
		19. Ligand: QHS × 2 (R)-2-(3-([1,1'-Biphenyl]-4-Carbonyl)-3-(4- Methylbenzyl)ureido)-3- ((Cyclohexylmethyl)sulfonyl) propanoic acid PDB codes: 6uvf(A),
		20. Ligand: QHV × 2 (R)-3-(Benzylthio)-2-(3-(4-Chloro-[1,1':2',1'':3'', 1'''-Quaterphenyl]-4'''-Carbonyl)-3-(4- Methylbenzyl) ureido)propanoic acid PDB codes: 6uve(A),
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Cluster 2 contains 4 ligand types

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4c52(A), 4c5d(A).
		2. Ligand: QHP × 1 (R)-2-(3-([1,1'-Biphenyl]-4-Carbonyl)-3-(4- Methylbenzyl)ureido)-3-(((3r,5r,7r)-Adamantan-1- Ylmethyl)sulfonyl)propanoic acid PDB code: 6uvg(C).
		3. Ligand: QHS × 1 (R)-2-(3-([1,1'-Biphenyl]-4-Carbonyl)-3-(4- Methylbenzyl)ureido)-3- ((Cyclohexylmethyl)sulfonyl) propanoic acid PDB code: 6uvf(I).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 7ca4(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 5fmk(A).
		2. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 6uvd(B),
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 4c52(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 4cin(A), 6uvh(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6o0m(A).
_Ca		3. Metal: _CA × 1 PDB code: 4cin(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: SO4 × 2 Sulfate ion PDB codes: 3r85(A), 6uvf(I).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 3inq(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 2yxj(A), 3qkd(A).
_Cd		2. Metal: _CD × 1 PDB code: 4bpk(A).