Ligand clusters for UniProt code Q03555

Ligand clusters for Q03555: Gephyrin from Rattus norvegicus

		Top 6 (of 38) ligand clusters Cluster 1. 11 ligand types 19 ligands Cluster 2. 2 ligand types 4 ligands Cluster 3. 6 ligand types 17 ligands Cluster 4. 6 ligand types 7 ligands Cluster 5. 4 ligand types 8 ligands Cluster 6. 3 ligand types 10 ligands
Representative protein: 4tk3A

Structures

PDB		Schematic diagram
4tk3A
6fgcA
5ertA
6hsnA
4u91A
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: D8Z × 1 artemether Artemether PDB code: 6fgd(A).
		2. Ligand: D95 × 1 artesunate Artesunate PDB code: 6fgc(A).
		3. Ligand: GOL × 1 glycerin Glycerol PDB code: 4pd1(A).
		4. Ligand: ACT × 6 Acetate ion PDB codes: 5erq(A), 5err(A), 5ert(A), 6fgd(A),
		5. Ligand: 3F7 × 2 1,1'-Benzene-1,4-Diylbis(1h-Pyrrole-2,5-Dione) PDB codes: 4u91(A), 6hso(A).
		6. Ligand: MPD × 2 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 5ers(A), 5eru(A).
		7. Ligand: PHE-ASN-ILE-VAL-GLY-THR-THR-TYR-PRO-CYS × 2 PDB codes: 4u90(A), 6hsn(A).
		8. Ligand: ASP-PHE-SER-ILE-VAL-GLY-SER-LEU-PRO-ARG × 1 PDB code: 4pd1(A).
		9. Ligand: PHE-ASN-ILE-VAL-GLY-THR-THR-TYR × 1 PDB code: 4tk2(A).
		10. Ligand: PHE-SER-ILE-VAL-GLY-THR-LEU-TYR × 1 PDB code: 4tk3(A).
		11. Ligand: PHE-SER-ILE-VAL-GLY-THR-LEU-TYR-PRO × 1 PDB code: 4tk4(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: PHE-ASN-ILE-VAL-GLY-THR-THR-TYR-PRO × 2 PDB codes: 4tk1(A), 4tk2(A).
		2. Ligand: PHE-SER-ILE-VAL-GLY-THR-LEU-TYR-PRO × 2 PDB codes: 4tk3(A), 4tk4(A).

Cluster 3 contains 6 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 5 PDB codes: 5err(A), 5eru(A), 5erv(A), 6hsn(A), 6hso(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 4tk1(A).
_Mn		3. Metal: _MN × 1 PDB code: 5ert(A).
		4. Ligand: ADP × 8 Adenosine-5'-Diphosphate PDB codes: 5err(A), 5ert(A), 5eru(A), 5erv(A), 6fgc(A), 6fgd(A), 6hsn(A), 6hso(A).
		5. Ligand: AMP × 1 Adenosine monophosphate PDB code: 5ers(A).
_Ca		6. Metal: _CA × 1 PDB code: 6fgd(A).

Cluster 4 contains 6 ligand types

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Ligand		Description
_Na		1. Metal: _NA × 2 PDB codes: 6fgd(A), 6hsn(A).
		2. Ligand: MOO × 1 Molybdate ion PDB code: 5eru(A).
		3. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 5err(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 1t3e(A).
		5. Ligand: WO4 × 1 Tungstate(VI)ion PDB code: 5erv(A).
_Cl		6. Metal: _CL × 1 PDB code: 6fgc(A).

Cluster 5 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 4pd1(A), 4tk1(A).
		2. Ligand: ACT × 4 Acetate ion PDB codes: 6fgc(A), 6fgd(A),
		3. Ligand: MPD × 1 (4s)-2-Methyl-2,4-Pentanediol PDB code: 5err(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 1t3e(A).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: ACT × 5 Acetate ion PDB codes: 6fgc(A), 6fgd(A), 6hsn(A), 6hso(A).
		2. Ligand: MPD × 3 (4s)-2-Methyl-2,4-Pentanediol PDB codes: 5err(A), 5ers(A), 5eru(A).
		3. Ligand: SO4 × 2 Sulfate ion PDB codes: 1t3e(A),