Ligand clusters for UniProt code P9WPQ5

Ligand clusters for P9WPQ5: ATP-dependent dethiobiotin synthetase BioD from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

		2 ligand clusters Cluster 1. 30 ligand types 56 ligands Cluster 2. 16 ligand types 23 ligands
Representative protein: 3fmiA

Structures

PDB		Schematic diagram
3fmiA
3fmfA
3fpaA
6czeA
6cvfA
		more ...

Cluster 1 contains 30 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: CIT × 1 citric acid Citric acid PDB code: 6nwn(A).
		2. Ligand: GEO × 1 gemcitabine Gemcitabine PDB code: 6nl4(A).
_Mg		3. Metal: _MG × 1 PDB code: 3fpa(A).
		4. Ligand: SO4 × 19 Sulfate ion PDB codes: 3fmi(A), 6cvu(A), 6nka(A), 6nl4(A), 6nlz(A), 6nmz(A), 6nn0(A), 6nnz(A), 6nu6(A), 6nvc(A), 6nvd(A), 6nve(A), 6nvf(A).
		5. Ligand: CTP × 3 Cytidine-5'-Triphosphate PDB codes: 6cve(A), 6e05(A), 6e06(A).
		6. Ligand: KSJ × 3 [(1s,2r)-2-(2-Hydroxybenzene-1-Carbonyl) cyclopentyl]acetic acid PDB codes: 6nlz(A), 6nmz(A), 6nn0(A).
		7. Ligand: KSP × 3 [(1r,2s)-2-(2-Hydroxybenzene-1-Carbonyl) cyclopentyl]acetic acid PDB codes: 6nlz(A), 6nmz(A), 6nn0(A).
		8. Ligand: DSD × 2 7-(Carboxyamino)-8-Amino-Nonanoic acid PDB codes: 3fmf(A), 6cve(A).
		9. Ligand: PO4 × 2 Phosphate ion PDB codes: 3fpa(A),
		10. Ligand: ADP × 1 Adenosine-5'-Diphosphate PDB code: 6czd(A).
		11. Ligand: ATP × 1 Adenosine-5'-Triphosphate PDB code: 6cvv(A).
		12. Ligand: CDP × 1 Cytidine-5'-Diphosphate PDB code: 6cvf(A).
		13. Ligand: CTN × 1 4-Amino-1-Beta-D-Ribofuranosyl-2(1h)-Pyrimidinone PDB code: 6cvu(A).
		14. Ligand: DCP × 1 2'-Deoxycytidine-5'-Triphosphate PDB code: 6nl5(A).
		15. Ligand: DCZ × 1 2'-Deoxycytidine PDB code: 6nka(A).
		16. Ligand: DTB × 1 6-(5-Methyl-2-Oxo-Imidazolidin-4-Yl)-Hexanoic acid PDB code: 3fpa(A).
		17. Ligand: ITT × 1 Inosine 5'-Triphosphate PDB code: 6cze(A).
		18. Ligand: KAP × 1 7-Keto-8-Aminopelargonic acid PDB code: 3fmi(A).
		19. Ligand: KUD × 1 [(1s,2r)-2-(Benzenecarbonyl)cyclopentyl]acetic acid PDB code: 6nnz(A).
		20. Ligand: KUG × 1 [(1r,2s)-2-(Benzenecarbonyl)cyclopentyl]acetic acid PDB code: 6nnz(A).
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Cluster 2 contains 16 ligand types

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Ligand		Description
		1. Ligand: SO4 × 4 Sulfate ion PDB codes: 6cvu(A), 6nlz(A), 6nmz(A), 6nnz(A).
		2. Ligand: KSJ × 3 [(1s,2r)-2-(2-Hydroxybenzene-1-Carbonyl) cyclopentyl]acetic acid PDB codes: 6nlz(A), 6nmz(A), 6nn0(A).
		3. Ligand: KSP × 3 [(1r,2s)-2-(2-Hydroxybenzene-1-Carbonyl) cyclopentyl]acetic acid PDB codes: 6nlz(A), 6nmz(A), 6nn0(A).
		4. Ligand: ADP × 1 Adenosine-5'-Diphosphate PDB code: 6czd(A).
		5. Ligand: DSD × 1 7-(Carboxyamino)-8-Amino-Nonanoic acid PDB code: 3fmf(A).
		6. Ligand: DTB × 1 6-(5-Methyl-2-Oxo-Imidazolidin-4-Yl)-Hexanoic acid PDB code: 3fpa(A).
		7. Ligand: KAP × 1 7-Keto-8-Aminopelargonic acid PDB code: 3fmi(A).
		8. Ligand: KUD × 1 [(1s,2r)-2-(Benzenecarbonyl)cyclopentyl]acetic acid PDB code: 6nnz(A).
		9. Ligand: KUG × 1 [(1r,2s)-2-(Benzenecarbonyl)cyclopentyl]acetic acid PDB code: 6nnz(A).
		10. Ligand: L1V × 1 4-[(1r,2s)-2-(Carboxymethyl)cyclopentane-1- Carbonyl]benzoic acid PDB code: 6nu6(A).
		11. Ligand: L1Y × 1 4-[(1s,2r)-2-(Carboxymethyl)cyclopentane-1- Carbonyl]benzoic acid PDB code: 6nu6(A).
		12. Ligand: L4M × 1 4-{[(1s,2s)-2-(Carboxymethyl)cyclopentyl]methyl}benzoic acid PDB code: 6nve(A).
		13. Ligand: L5A × 1 (4-{[(1s,2s)-2-(Carboxymethyl) cyclopentyl]methyl}phenyl)acetic acid PDB code: 6nvf(A).
		14. Ligand: L5J × 1 (4-{[(1r,2r)-2-(Carboxymethyl) cyclopentyl]methyl}phenyl)acetic acid PDB code: 6nvf(A).
		15. Ligand: L67 × 1 {(1s,2r)-2-[4-(Carboxymethyl)benzene-1- Carbonyl]cyclopentyl}acetic acid PDB code: 6nvc(A).
		16. Ligand: L6J × 1 [(1r,2r)-2-(2-Methoxybenzene-1-Carbonyl) cyclopentyl]propanedioic acid PDB code: 6nwg(A).