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Ligand clusters for UniProt code P94368

Ligand clusters for P94368: ADP-dependent (S)-NAD(P)H-hydrate dehydratase from Bacillus subtilis (strain 168)

4 ligand clusters
Cluster 1.
10 ligand types
13 ligands
Cluster 2.
5 ligand types
5 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Representative protein: 3rphA  
JSmol
 

Structures

PDB   Schematic diagram
3rphA    
3rq5A    
3rq8A    
3rq6A    
3rqqA    
 more ...

 

 Cluster 1 contains 10 ligand types

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Ligand Description


 
1. Ligand: AMP × 4
Adenosine monophosphate
PDB codes: 3rph(A), 3rpz(A), 3rq2(A).


 
2. Ligand: AP5 × 1
Bis(adenosine)-5'-Pentaphosphate
PDB code: 3rq8(A).


 
3. Ligand: APR × 1
Adenosine-5-Diphosphoribose
PDB code: 3rq6(A).


 
4. Ligand: B4P × 1
Bis(adenosine)-5'-Tetraphosphate
PDB code: 3rqx(A).


 
5. Ligand: B6P × 1
P1,P6-Di(adenosine-5') Hexaphosphate
PDB code: 3rqh(A).


 
6. Ligand: BA3 × 1
Bis(adenosine)-5'-Triphosphate
PDB code: 3rqq(A).


 
7. Ligand: COA × 1
Coenzyme a
PDB code: 3rq5(A).


 
8. Ligand: NAX × 1
Beta-6-Hydroxy-1,4,5,6-Tetrhydronicotinamide adenine dinucleotide
PDB code: 3rq2(A).


 
9. Ligand: NPW × 1
Beta-6-Hydroxy-1,4,5,6-Tetrahydronicotinamide adenine dinucleotide phosphate
PDB code: 3rpz(A).


 
10. Ligand: PO4 × 1
Phosphate ion
PDB code: 3rph(A).

 

 Cluster 2 contains 5 ligand types

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3rq5(A).


 
2. Ligand: AP5 × 1
Bis(adenosine)-5'-Pentaphosphate
PDB code: 3rq8(A).


 
3. Ligand: APR × 1
Adenosine-5-Diphosphoribose
PDB code: 3rq6(A).


 
4. Ligand: B4P × 1
Bis(adenosine)-5'-Tetraphosphate
PDB code: 3rqx(A).


 
5. Ligand: B6P × 1
P1,P6-Di(adenosine-5') Hexaphosphate
PDB code: 3rqh(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: B4P × 1
Bis(adenosine)-5'-Tetraphosphate
PDB code: 3rqx(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 1
glycerin
Glycerol
PDB code: 3rq5(A).

 

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