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PDBsum
Ligand clusters for UniProt code P81180
Ligand clusters for P81180: Cyanovirin-N from Nostoc ellipsosporum
Top 6 (of 9) ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
3 ligand types
3 ligands
Cluster 3.
1 ligand type
3 ligands
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 3s3zA
Structures
PDB
Schematic diagram
3s3z
A
1lom
A
3gxy
A
1l5b
A
3s3y
A
more ...
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN × 1
NAG
=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose,
BMA
=Beta-D-Mannopyranose,
MAN
=Alpha-D-Mannopyranose.
PDB code:
3gxz
(A).
2. Ligand:
OPM-MAN-MAN × 1
OPM
=Pentyl alpha-D-Mannopyranoside,
MAN
=Alpha-D-Mannopyranose.
PDB code:
3gxy
(A).
3. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3lhc
(A).
4. Ligand:
SO4 × 1
Sulfate ion
PDB code:
1lom
(A).
Cluster 2 contains 3 ligand types
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Ligand
Description
1. Ligand:
BMA-MAN-MAN-MAN × 1
BMA
=Beta-D-Mannopyranose,
MAN
=Alpha-D-Mannopyranose.
PDB code:
3gxz
(A).
2. Ligand:
OPM-MAN-MAN × 1
OPM
=Pentyl alpha-D-Mannopyranoside,
MAN
=Alpha-D-Mannopyranose.
PDB code:
3gxy
(A).
_Na
3. Metal:
_NA × 1
PDB code:
3lhc
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
NHE × 3
2-[N-Cyclohexylamino]ethane sulfonic acid
PDB codes:
1l5b
(A),
3gxy
(A),
3gxz
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3lhc
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
PO4 × 1
Phosphate ion
PDB code:
3lhc
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 1
PDB code:
1l5b
(A).