Ligand clusters for UniProt code P68082

Ligand clusters for P68082: Myoglobin from Equus caballus

		Top 6 (of 16) ligand clusters Cluster 1. 33 ligand types 95 ligands Cluster 2. 2 ligand types 3 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 2 ligand types 5 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 1 ligand type 5 ligands
Representative protein: 5ycgA

Structures

PDB		Schematic diagram
5ycgA
1rseA
1nz5A
1nz3A
1ymcA
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Cluster 1 contains 33 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 2v1h(A), 2v1i(A), 2v1j(A), 2v1k(A), 5z7f(A).
_Mn		2. Metal: _MN × 1 PDB code: 1nz5(A).
		3. Ligand: HEM × 42 Protoporphyrin IX containing fe PDB codes: 1dws(A), 1dwt(A), 1hrm(A), 1hsy(A), 1nz2(A), 1nz3(A), 1nz4(A), 1nz5(A), 1rse(A), 1wla(A), 1xch(A), 1yma(A), 1ymb(A), 2fri(X), 2v1h(A), 2v1i(A), 2v1j(A), 2v1k(A), 3hc9(A), 3hen(A), 3rj6(A), 4dc7(A), 4dc8(A), 4ns2(A), 5cmv(A), 5cn4(A), 5cn5(A), 5cn6(A), 5cn7(A), 5cn8(A), 5cn9(A), 5cnb(A), 5cnc(A), 5cnd(A), 5cne(A), 5cnf(A), 5cng(A), 5d5r(A), 5ycg(A), 5z7e(A), 5zze(A), 6ls8(A).
		4. Ligand: HEM-NO2 × 4 HEM=Protoporphyrin IX containing fe, NO2=Nitrite ion. PDB codes: 3heo(A), 3hep(A), 3lr7(A), 3lr9(A).
		5. Ligand: J1R × 3 (1r,19r) cobalt tetradehydrocorrin PDB codes: 3wft(A), 3wfu(A), 5azr(A).
		6. Ligand: J1S × 3 (1s,19s) cobalt tetradehydrocorrin PDB codes: 3wft(A), 3wfu(A), 5azr(A).
		7. Ligand: SO4 × 3 Sulfate ion PDB codes: 4dc7(A), 4dc8(A), 4twu(A).
		8. Ligand: AZI-HEM × 2 AZI=Azide ion, HEM=Protoporphyrin IX containing fe. PDB codes: 1azi(A), 1bje(A).
		9. Ligand: HE5 × 2 Zinc(ii)-Deuteroporphyrin dimethylester PDB codes: 2in4(A), 3rjn(B).
		10. Ligand: HEM-PER × 2 HEM=Protoporphyrin IX containing fe, PER=Peroxide ion. PDB codes: 2vlx(A), 2vlz(A).
		11. Ligand: HKL-NO2 × 2 HKL=Fe(III) pyropheophorbide-A methyl ester, NO2=Nitrite ion. PDB codes: 3v2v(A), 3v2z(A).
		12. Ligand: HNN × 2 Porphycene containing mn PDB codes: 3wi8(A), 5yl3(A).
		13. Ligand: MNR × 2 Protoporphyrin IX containing mn PDB codes: 2o58(X), 2o5m(X).
		14. Ligand: NBE × 2 Nitrosobenzene PDB codes: 2nss(A),
		15. Ligand: ZND × 2 Zinc (ii) deuteroporphyrin IX PDB codes: 4twu(A), 4twv(A).
		16. Ligand: COH × 1 Protoporphyrin IX containing co PDB code: 2o5t(X).
		17. Ligand: CYN-CLN × 1 CYN=Cyanide ion, CLN=Sulfur substituted protoporphyrin IX. PDB code: 1ymc(A).
		18. Ligand: HEM-CMO × 1 HEM=Protoporphyrin IX containing fe, CMO=Carbon monoxide. PDB code: 1dwr(A).
		19. Ligand: HEM-H2S × 1 HEM=Protoporphyrin IX containing fe, H2S=Hydrosulfuric acid. PDB code: 5z7f(A).
		20. Ligand: HEM-NBE × 1 HEM=Protoporphyrin IX containing fe, NBE=Nitrosobenzene. PDB code: 2nss(A).
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Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 2vlx(A), 3wft(A).
		2. Ligand: NBE × 1 Nitrosobenzene PDB code: 2nss(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: NBE × 1 Nitrosobenzene PDB code: 2nss(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 5zze(A).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 2v1i(A), 2v1j(A), 2vly(A).
		2. Ligand: SO4 × 2 Sulfate ion PDB codes: 2o5b(X), 5yl3(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: PO4 × 1 Phosphate ion PDB code: 3hc9(A).
_Cd		2. Metal: _CD × 1 PDB code: 1nz4(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 5 glycerin Glycerol PDB codes: 2v1h(A), 2v1i(A), 2v1k(A), 2vly(A), 2vlz(A).