Ligand clusters for UniProt code P62826

Ligand clusters for P62826: GTP-binding nuclear protein Ran from Homo sapiens

		Top 6 (of 17) ligand clusters Cluster 1. 7 ligand types 171 ligands Cluster 2. 3 ligand types 47 ligands Cluster 3. 2 ligand types 2 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 2 ligand types 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 6a38A

Structures

PDB		Schematic diagram
6a38A
4haxA
4gmxA
5jljA
4hazA
		more ...

Cluster 1 contains 7 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 73 PDB codes: 1ibr(A), 1k5d(A), 1k5g(A), 1qbk(C), 1rrp(A), 3ch5(A), 3ea5(A), 3gj0(A), 3gj3(A), 3gj4(A), 3gj5(A), 3gj6(A), 3gj7(A), 3gj8(A), 3gjx(C), 3nby(C), 3nc0(C), 3nc1(C), 3zjy(A), 4c0q(C), 4gmx(A), 4gpt(A), 4hat(A), 4hau(A), 4hav(A), 4haw(A), 4hax(A), 4hay(A), 4haz(A), 4hb0(A), 4hb2(A), 4hb3(A), 4hb4(A), 4ol0(A), 4wvf(A), 5ciq(A), 5cit(A), 5ciw(A), 5cj2(A), 5cll(A), 5clq(A), 5dh9(A), 5dha(A), 5dhf(A), 5di9(A), 5dif(A), 5dlq(C), 5jlj(A), 5uwh(A), 5uwi(A), 5uwj(A), 5uwo(A), 5uwp(A), 5uwq(A), 5uwr(A), 5uws(A), 5uwt(A), 5uwu(A), 5uww(A), 5yro(A), 5yst(A), 5ytb(A), 5zpu(A), 6a38(A), 6a3a(A), 6a3b(A), 6a3c(A), 6a3e(A), 6cit(A), 6q82(B), 6q84(B).
		2. Ligand: GNP × 54 Phosphoaminophosphonic acid-Guanylate ester PDB codes: 1ibr(A), 1k5d(A), 1qbk(C), 1rrp(A), 4gmx(A), 4gpt(A), 4hat(A), 4hau(A), 4hav(A), 4haw(A), 4hax(A), 4hay(A), 4haz(A), 4hb0(A), 4hb2(A), 4hb3(A), 4hb4(A), 4wvf(A), 5clq(A), 5dh9(A), 5dha(A), 5dhf(A), 5di9(A), 5dif(A), 5jlj(A), 5uwh(A), 5uwi(A), 5uwj(A), 5uwo(A), 5uwp(A), 5uwq(A), 5uwr(A), 5uws(A), 5uwt(A), 5uwu(A), 5uww(A), 6cit(A), 6x2m(A), 6x2o(A), 6x2p(A), 6x2r(A), 6x2s(A), 6x2u(A), 6x2v(A), 6x2w(A), 6x2x(A), 6x2y(A), 6xjp(A), 6xjr(A), 6xjs(A), 6xjt(A), 6xju(A), 7l5e(A).
		3. Ligand: GTP × 26 Guanosine-5'-Triphosphate PDB codes: 3gjx(C), 3nby(C), 3nbz(C), 3nc0(C), 3nc1(C), 3zjy(A), 4c0q(C), 4ol0(A), 5dis(B), 5dlq(C), 5yro(A), 5yst(A), 5ysu(A), 5ytb(A), 5zpu(A), 6a38(A), 6a3a(A), 6a3b(A), 6a3c(A), 6a3e(A), 6kft(A), 6m6x(A), 6q82(B), 6q84(B), 6tvo(B), 7b51(B).
		4. Ligand: GDP × 15 Guanosine-5'-Diphosphate PDB codes: 1k5g(A), 3ch5(A), 3ea5(A), 3gj0(A), 3gj3(A), 3gj4(A), 3gj5(A), 3gj6(A), 3gj7(A), 3gj8(A), 5ciq(A), 5cit(A), 5ciw(A), 5cj2(A).
		5. Ligand: AF3 × 1 Aluminum fluoride PDB code: 1k5g(A).
		6. Ligand: GDP-BEF × 1 GDP=Guanosine-5'-Diphosphate, BEF=Beryllium trifluoride ion. PDB code: 5cll(A).
		7. Ligand: SO4 × 1 Sulfate ion PDB code: 1i2m(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 27 glycerin Glycerol PDB codes: 5dh9(A), 5dha(A), 5dhf(A), 5di9(A), 5dif(A), 5jlj(A), 5uwh(A), 5uwi(A), 5uwj(A), 5uwo(A), 5uwp(A), 5uwq(A), 5uwr(A), 5uws(A), 5uwt(A), 5uwu(A), 5uww(A), 6cit(A), 6x2p(A), 6x2r(A), 6x2s(A), 6x2u(A), 6x2v(A), 6x2w(A), 6x2x(A), 6x2y(A), 7l5e(A).
		2. Ligand: EDO × 19 1,2-Ethanediol PDB codes: 4gmx(A), 4gpt(A), 4hat(A), 4hau(A), 4haw(A), 4hax(A), 4hay(A), 4hb2(A), 4hb4(A), 4wvf(A), 5yro(A), 5yst(A), 5ytb(A), 6a38(A), 6a3a(A), 6a3b(A), 6a3c(A), 6kft(A), 6m6x(A).
		3. Ligand: NO3 × 1 Nitrate ion PDB code: 5ysu(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4haw(A).
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 4hau(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3nc0(C).

Cluster 5 contains 2 ligand types

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Ligand		Description
_Mg		1. Metal: _MG × 2 PDB codes: 3gj7(A), 3gj8(A).
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 3ch5(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 3nc0(C).