Ligand clusters for UniProt code P61889

Ligand clusters for P61889: Malate dehydrogenase from Escherichia coli (strain K12)

		5 ligand clusters Cluster 1. 5 ligand types 8 ligands Cluster 2. 2 ligand types 6 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 4 ligands Cluster 5. 1 ligand type 2 ligands
Representative protein: 1emdA

Structures

PDB		Schematic diagram
1emdA
7cgcA
5z3wA
7cgdA
2cmdA
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: NAD × 3 Nicotinamide-Adenine-Dinucleotide PDB codes: 1emd(A), 1ib6(A), 1ie3(A).
		2. Ligand: CIT × 2 citric acid Citric acid PDB codes: 1emd(A), 2cmd(A).
		3. Ligand: 6V0 × 1 [[(2~{r},3~{s},4~{r},5~{r})-5-(5-Aminocarbonyl-2~{h}- Pyridin-1-Yl)-3,4-Bis(oxidanyl)oxolan-2- Yl]methoxy- Oxidanyl-Phosphoryl] [(2~{r},3~{s},4~{r},5~{r})-5-(6- Aminopurin-9-Yl)-3,4- Bis(oxidanyl)oxolan-2-Yl]methyl hydrogen phosphate PDB code: 5kka(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 1ib6(A).
_Ag		5. Metal: _AG × 1 PDB code: 7cgd(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 6ka0(A).
_Ag		2. Metal: _AG × 5 PDB codes: 5z3w(A), 7cgc(A), 7cgd(A),

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1ib6(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
_Ag		1. Metal: _AG × 4 PDB codes: 7cgc(A), 7cgd(A),

Cluster 5 contains 1 ligand type

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Ligand		Description
_Ag		1. Metal: _AG × 2 PDB codes: 7cgd(A),