Ligand clusters for UniProt code P54818

Ligand clusters for P54818: Galactocerebrosidase from Mus musculus

		6 ligand clusters Cluster 1. 11 ligand types 13 ligands Cluster 2. 3 ligand types 15 ligands Cluster 3. 2 ligand types 15 ligands Cluster 4. 1 ligand type 15 ligands Cluster 5. 1 ligand type 15 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 5n8kA

Structures

PDB		Schematic diagram
5n8kA
4cceA
3zr6A
4uflA
4ccdA
		more ...

Cluster 1 contains 11 ligand types

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Ligand		Description
		1. Ligand: GAL × 2 galactose Beta-D-Galactopyranose PDB codes: 3zr6(A), 4cce(A).
		2. Ligand: DGJ × 1 migalastat (2r,3s,4r,5s)-2-(Hydroxymethyl)piperidine-3,4,5-Triol PDB code: 4ufm(A).
		3. Ligand: ODW × 2 (1~{r},2~{s},3~{s},4~{r},5~{r})-4-(Hydroxymethyl)-8- Azabicyclo[3.2.1]octane-1,2,3-Triol PDB codes: 6y6s(A), 6y6t(A).
		4. Ligand: 147 × 1 4-Nitrophenyl beta-D-Galactopyranoside PDB code: 4ccc(A).
		5. Ligand: 2DG × 1 2-Deoxy-Alpha-D-Galactopyranose PDB code: 4ccd(A).
		6. Ligand: AGK × 1 (3r,4s,5r)-3-(Hydroxymethyl)-1,2-Diazinane-4,5-Diol PDB code: 4ufi(A).
		7. Ligand: DZX × 1 Deoxy-Galacto-Noeurostegine PDB code: 4ufl(A).
		8. Ligand: GIF × 1 D-Galacto-Isofagomine PDB code: 4ufh(A).
		9. Ligand: IF7 × 1 (3s,4s,5r)-5-(Hydroxymethyl)-3,4-Bis(oxidanyl) piperidin-2-One PDB code: 4ufj(A).
		10. Ligand: LDU × 1 Dideoxy-Imino-Lyxitol PDB code: 4ufk(A).
		11. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 4ufh(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 4ufk(A).
		2. Ligand: NAG-NAG × 11 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 3zr5(A), 4ccc(A), 4ccd(A), 4cce(A), 4ufh(A), 4ufi(A), 4ufj(A), 4ufl(A), 4ufm(A), 6y6s(A), 6y6t(A).
		3. Ligand: NAG-NAG-BMA × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB codes: 3zr6(A), 5n8k(A), 5nxb(A).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 1 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB code: 3zr6(A).
		2. Ligand: NAG-NAG × 14 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 3zr5(A), 4ccc(A), 4ccd(A), 4cce(A), 4ufh(A), 4ufi(A), 4ufj(A), 4ufk(A), 4ufl(A), 4ufm(A), 5n8k(A), 5nxb(A), 6y6s(A), 6y6t(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG-NAG × 15 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 3zr5(A), 3zr6(A), 4ccc(A), 4ccd(A), 4cce(A), 4ufh(A), 4ufi(A), 4ufj(A), 4ufk(A), 4ufl(A), 4ufm(A), 5n8k(A), 5nxb(A), 6y6s(A), 6y6t(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG × 15 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3zr5(A), 3zr6(A), 4ccc(A), 4ccd(A), 4cce(A), 4ufh(A), 4ufi(A), 4ufj(A), 4ufk(A), 4ufl(A), 4ufm(A), 5n8k(A), 5nxb(A), 6y6s(A), 6y6t(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Ca		1. Metal: _CA × 1 PDB code: 5n8k(A).