Ligand clusters for UniProt code P46881

Ligand clusters for P46881: Phenylethylamine oxidase from Arthrobacter globiformis

		Top 6 (of 56) ligand clusters Cluster 1. 14 ligand types 26 ligands Cluster 2. 2 ligand types 6 ligands Cluster 3. 9 ligand types 104 ligands Cluster 4. 7 ligand types 83 ligands Cluster 5. 4 ligand types 5 ligands Cluster 6. 4 ligand types 30 ligands
Representative protein: 6l9cX

Structures

PDB		Schematic diagram
6l9cX
1w6cA
1w6gA
3x3yA
1sihA
		more ...

Cluster 1 contains 14 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 3amo(A), 3x3y(A), 3x3z(A), 3x41(A).
		2. Ligand: R4A × 2 Bis[1h,1'H-2,2'-Bipyridinato(2-)-Kappa~2~n~1~,N~1'~]{3- [4-(1,10-Dihydro-1,10-Phenanthrolin-4-Yl- Kappa~2~n~1~, N~10~)butoxy]-N,N-Dimethylanilinato(2-)}Ruthenium PDB codes: 2cfd(A), 2cfg(A).
		3. Ligand: R5A × 1 Ruthenium wire, 5 carbon linker PDB code: 2cfk(A).
		4. Ligand: R5B × 1 Ruthenium wire wc5 PDB code: 2cfk(A).
		5. Ligand: R6A × 1 Ruthenium wire, 6 carbon linker PDB code: 2cfl(A).
		6. Ligand: R7U × 1 Ruthenium wire, 7 carbon linker PDB code: 2cfw(A).
		7. Ligand: 11R × 1 Ruthenium wire, 11 carbon linker PDB code: 2cg1(A).
		8. Ligand: R9A × 1 Ruthenium wire, 9 carbon linker PDB code: 2cg0(A).
		9. Ligand: HY1 × 7 Phenylacetaldehyde PDB codes: 5zpn(A), 5zpo(A), 5zpp(A), 5zpq(A), 5zpr(A), 5zps(A), 5zpt(A).
		10. Ligand: R4A × 1 Bis[1h,1'H-2,2'-Bipyridinato(2-)- Kappa~2~n~1~,N~1'~]{3-[4-(1,10-Dihydro-1,10- Phenanthrolin-4-Yl- Kappa~2~n~1~,N~10~)butoxy]-N,N- Dimethylanilinato(2-)}Ruthenium PDB code: 2bt3(A).
		11. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 3wa2(X), 3wa3(A).
		12. Ligand: PGE × 2 Triethylene glycol PDB codes: 3wa2(X),
		13. Ligand: PEL × 1 2-Phenyl-Ethanol PDB code: 3x3x(A).
		14. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 3wa3(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 3amo(A), 3x3z(A), 3x41(A).
		2. Ligand: R4A × 2 Bis[1h,1'H-2,2'-Bipyridinato(2-)-Kappa~2~n~1~,N~1'~]{3- [4-(1,10-Dihydro-1,10-Phenanthrolin-4-Yl- Kappa~2~n~1~, N~10~)butoxy]-N,N-Dimethylanilinato(2-)}Ruthenium PDB codes: 2cfd(A), 2cfg(A).

Cluster 3 contains 9 ligand types

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Ligand		Description
		1. Ligand: GOL × 16 glycerin Glycerol PDB codes: 1w4n(A), 1w5z(A), 1w6g(A), 2bt3(A), 2cfg(A), 2cfk(A), 2cfw(A), 2cg0(A), 2cg1(A), 3amo(A), 3kii(A), 3x3z(A), 3x41(A), 3x42(A).
_Cu		2. Metal: _CU × 77 PDB codes: 1iu7(A), 1ivu(A), 1ivv(A), 1ivw(A), 1ivx(A), 1rjo(A), 1sih(A), 1sii(A), 1ui7(A), 1ui8(A), 1w4n(A), 1w5z(A), 1w6c(A), 1w6g(A), 2bt3(A), 2cfd(A), 2cfg(A), 2cfk(A), 2cfl(A), 2cfw(A), 2cg0(A), 2cg1(A), 2cwt(A), 2cwu(A), 2cwv(A), 2d1w(A), 2e2t(A), 2e2u(A), 2e2v(A), 2yx9(A), 2zl8(A), 3kii(A), 3kn4(A), 3wa2(X), 3wa3(A), 3x3x(A), 3x3y(A), 3x3z(A), 3x40(A), 3x41(A), 3x42(A), 5zou(A), 5zow(A), 5zox(A), 5zoy(A), 5zoz(A), 5zp0(A), 5zp1(A), 5zp2(A), 5zp3(A), 5zp4(A), 5zp5(A), 5zp6(A), 5zp7(A), 5zp8(A), 5zp9(A), 5zpa(A), 5zpb(A), 5zpc(A), 5zpd(A), 5zpe(A), 5zpf(A), 5zpg(A), 5zph(A), 5zpi(A), 5zpj(A), 5zpk(A), 5zpl(A), 5zpm(A), 5zpn(A), 5zpo(A), 5zpp(A), 5zpq(A), 5zpr(A), 5zps(A), 5zpt(A), 6l9c(X).
_Co		3. Metal: _CO × 3 PDB codes: 1iqx(A), 1wmn(A), 1wmp(A).
_Cl		4. Metal: _CL × 2 PDB codes: 3x3z(A), 3x40(A).
_Ni		5. Metal: _NI × 2 PDB codes: 1iqy(A), 1wmo(A).
		6. Ligand: 1PE × 1 Pentaethylene glycol PDB code: 3wa2(X).
		7. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3wa3(A).
		8. Ligand: SO4 × 1 Sulfate ion PDB code: 3kii(A).
_Br		9. Metal: _BR × 1 PDB code: 3x41(A).

Cluster 4 contains 7 ligand types

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Ligand		Description
		1. Ligand: GOL × 48 glycerin Glycerol PDB codes: 2bt3(A), 2cfd(A), 2cfg(A), 2cfk(A), 2cfl(A), 2cfw(A), 2cg0(A), 3amo(A), 3kii(A), 3kn4(A), 3x3x(A), 3x3y(A), 3x3z(A), 3x40(A), 3x41(A), 3x42(A),
		2. Ligand: SO4 × 20 Sulfate ion PDB codes: 1rjo(A), 1sih(A), 1sii(A), 1w6g(A), 2cfd(A), 2cfg(A), 2cfk(A), 2cfl(A), 2cfw(A), 2cg0(A), 2cg1(A), 1w4n(A), 1w5z(A), 2bt3(A), 3kii(A), 3kn4(A).
		3. Ligand: EDO × 9 1,2-Ethanediol PDB codes: 3wa2(X), 5zoy(A), 5zp7(A), 5zpg(A), 5zpi(A), 5zpj(A), 5zps(A).
		4. Ligand: PEG × 2 Di(hydroxyethyl)ether PDB codes: 3wa2(X), 3wa3(A).
_Br		5. Metal: _BR × 2 PDB codes: 3x41(A), 3x42(A).
		6. Ligand: EDO-EDO × 1 EDO=1,2-Ethanediol. PDB code: 5zpg(A).
_Cl		7. Metal: _CL × 1 PDB code: 3x40(A).

Cluster 5 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 3amo(A),
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 3wa2(X).
		3. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 3wa2(X).
		4. Ligand: PGE × 1 Triethylene glycol PDB code: 3wa3(A).

Cluster 6 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 7 glycerin Glycerol PDB codes: 3amo(A), 3kn4(A), 3x41(A).
		2. Ligand: EDO × 19 1,2-Ethanediol PDB codes: 3wa2(X), 3wa3(A), 5zow(A), 5zoz(A), 5zp0(A), 5zp1(A), 5zp2(A), 5zp3(A), 5zp6(A), 5zpe(A), 5zpj(A), 5zpl(A), 5zpm(A), 5zpn(A), 5zpo(A), 5zpp(A), 5zpq(A).
		3. Ligand: PEG × 3 Di(hydroxyethyl)ether PDB codes: 3wa2(X), 3wa3(A).
		4. Ligand: SO4 × 1 Sulfate ion PDB code: 1w5z(A).