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Ligand clusters for UniProt code P41250

Ligand clusters for P41250: Glycine--tRNA ligase from Homo sapiens

5 ligand clusters
Cluster 1.
9 ligand types
12 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
1 ligand type
1 ligand
Cluster 5.
1 ligand type
1 ligand
Representative protein: 4kqeA  
JSmol
 

Structures

PDB   Schematic diagram
4kqeA    
2q5iA    
2pmfA    
2zxfA    
2zt7A    
 more ...

 

 Cluster 1 contains 9 ligand types

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Ligand Description


 
1. Ligand: GLY × 2
glycine
PDB codes: 2zt7(A), 4kr3(A).


 
2. Ligand: AMP × 2
Adenosine monophosphate
PDB codes: 4kr2(A), 4qei(A).


 
3. Ligand: B4P × 2
Bis(adenosine)-5'-Tetraphosphate
PDB codes: 2zt5(A), 2zxf(A).


 
4. Ligand: ANP × 1
Phosphoaminophosphonic acid-Adenylate ester
PDB code: 4kr3(A).


 
5. Ligand: APC × 1
Diphosphomethylphosphonic acid adenosyl ester
PDB code: 2zt6(A).


 
6. Ligand: ATP × 1
Adenosine-5'-Triphosphate
PDB code: 2zt7(A).


 
7. Ligand: DRV × 1
[(2s,3r,4r,5r)-5-(6-Amino-9h-Purin-9-Yl)-3,4- Dihydroxytetrahydrofuran-2-
Yl]methyl (aminoacetyl) sulfamate
PDB code: 2zt8(A).


 
8. Ligand: GAP × 1
Glycyl-Adenosine-5'-Phosphate
PDB code: 5e6m(A).

_Cl
 
9. Metal: _CL × 1
PDB code: 2pmf(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
glycerin
Glycerol
PDB codes: 2pmf(A), 4kqe(A).


 
2. Ligand: SO4 × 1
Sulfate ion
PDB code: 2q5i(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 2q5i(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 2q5i(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 5e6m(A).

 

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