Ligand clusters for UniProt code P33183

Ligand clusters for P33183: Nigrin b from Sambucus nigra

		Top 6 (of 15) ligand clusters Cluster 1. 2 ligand types 8 ligands Cluster 2. 7 ligand types 17 ligands Cluster 3. 6 ligand types 7 ligands Cluster 4. 3 ligand types 15 ligands Cluster 5. 2 ligand types 8 ligands Cluster 6. 1 ligand type 8 ligands
Representative protein: 3c9zA

Structures

PDB		Schematic diagram
3c9zA
3ca0A
3ca4A
3ca3A
3cahA
		more ...

Cluster 1 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG-FUC-NAG × 7 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 3c9z(A), 3ca1(A), 3ca3(A), 3ca4(A), 3ca5(A), 3ca6(A), 3cah(A).
		2. Ligand: NAG-NAG-BMA-XYP-MAN-MAN-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, XYP=Beta-D-Xylopyranose, MAN=Alpha-D-Mannopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 3ca0(A).

Cluster 2 contains 7 ligand types

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Ligand		Description
		1. Ligand: SO4 × 10 Sulfate ion PDB codes: 3c9z(A), 3ca0(A), 3ca1(A), 3ca3(A), 3ca4(A), 3ca5(A), 3ca6(A), 3cah(A).
		2. Ligand: A2G × 2 2-Acetamido-2-Deoxy-Alpha-D-Galactopyranose PDB codes: 3ca3(A), 3ca6(A).
		3. Ligand: AMG × 1 Methyl alpha-D-Galactopyranoside PDB code: 3ca5(A).
		4. Ligand: BGC-GAL × 1 BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose. PDB code: 3ca4(A).
		5. Ligand: FCA × 1 Alpha-D-Fucopyranose PDB code: 3cah(A).
		6. Ligand: GLA × 1 Alpha-D-Galactopyranose PDB code: 3ca1(A).
		7. Ligand: NGA × 1 2-Acetamido-2-Deoxy-Beta-D-Galactopyranose PDB code: 3ca3(A).

Cluster 3 contains 6 ligand types

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Ligand		Description
		1. Ligand: ACT × 2 Acetate ion PDB codes: 3ca6(A), 3cah(A).
		2. Ligand: A2G × 1 2-Acetamido-2-Deoxy-Alpha-D-Galactopyranose PDB code: 3ca3(A).
		3. Ligand: AMG × 1 Methyl alpha-D-Galactopyranoside PDB code: 3ca5(A).
		4. Ligand: BGC-GAL × 1 BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose. PDB code: 3ca4(A).
		5. Ligand: GLA × 1 Alpha-D-Galactopyranose PDB code: 3ca1(A).
		6. Ligand: NGA × 1 2-Acetamido-2-Deoxy-Beta-D-Galactopyranose PDB code: 3ca3(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG-FUC-NAG × 7 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB codes: 3c9z(A), 3ca1(A), 3ca3(A), 3ca4(A), 3ca5(A), 3ca6(A), 3cah(A).
		2. Ligand: SO4 × 7 Sulfate ion PDB codes: 3c9z(A), 3ca0(A), 3ca1(A), 3ca3(A), 3ca4(A), 3ca5(A), 3cah(A).
		3. Ligand: NAG-FUC × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 3ca0(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG × 7 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 3c9z(A), 3ca1(A), 3ca3(A), 3ca4(A), 3ca5(A), 3ca6(A), 3cah(A).
		2. Ligand: NAG-FUC-NAG × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, FUC=Alpha-L-Fucopyranose. PDB code: 3ca0(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: NAG-NAG × 8 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 3c9z(A), 3ca0(A), 3ca1(A), 3ca3(A), 3ca4(A), 3ca5(A), 3ca6(A), 3cah(A).