Ligand clusters for UniProt code P31356

Ligand clusters for P31356: Rhodopsin from Todarodes pacificus

		5 ligand clusters Cluster 1. 2 ligand types 6 ligands Cluster 2. 1 ligand type 3 ligands Cluster 3. 1 ligand type 5 ligands Cluster 4. 1 ligand type 4 ligands Cluster 5. 1 ligand type 1 ligand
Representative protein: 2ziyA

Structures

PDB		Schematic diagram
2ziyA
3aynA
2z73A
4ww3A
3aymA

Cluster 1 contains 2 ligand types

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Ligand		Description
		1. Ligand: PLM × 4 palmitic acid Palmitic acid PDB codes: 2z73(A), 2ziy(A), 4ww3(A).
		2. Ligand: TWT × 2 Docosane PDB codes: 2z73(A), 4ww3(A).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: BOG × 3 Octyl beta-D-Glucopyranoside PDB codes: 2z73(A), 3aym(A), 4ww3(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: RET × 5 Retinal PDB codes: 2z73(A), 2ziy(A), 3aym(A), 3ayn(A), 4ww3(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PLM × 4 palmitic acid Palmitic acid PDB codes: 2z73(A), 3aym(A), 3ayn(A), 4ww3(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PLM × 1 palmitic acid Palmitic acid PDB code: 3ayn(A).