Ligand clusters for UniProt code P29373

Ligand clusters for P29373: Cellular retinoic acid-binding protein 2 from Homo sapiens

		Top 6 (of 15) ligand clusters Cluster 1. 18 ligand types 70 ligands Cluster 2. 3 ligand types 4 ligands Cluster 3. 4 ligand types 5 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 2 ligands
Representative protein: 5hzqA

Structures

PDB		Schematic diagram
5hzqA
1cbqA
2cbsA
2fr3A
1cbsA
		more ...

Cluster 1 contains 18 ligand types

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Ligand		Description
		1. Ligand: REA × 4 tretinoin Retinoic acid PDB codes: 1cbs(A), 2fr3(A), 2g78(A), 3cwk(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 6mqy(A).
		3. Ligand: RET × 36 Retinal PDB codes: 2g79(A), 4i9r(A), 4i9s(A), 4m6s(A), 4m7m(A), 4ybp(A), 4ybu(A), 4yce(A), 4ych(A), 4yda(A), 4ydb(A), 4yfp(A), 4yfq(A), 4yfr(A), 4ygg(A), 4ygh(A), 4ygz(A), 4yh0(A), 4ykm(A), 4yko(A), 6mop(A), 6moq(A), 6mor(A), 6mov(A), 6mox(A), 6mpk(A), 6mqi(A), 6mqj(A), 6mqw(A), 6mqx(A), 6mqy(A), 6mqz(A), 6mr0(A), 6nnx(A), 6nny(A), 6noe(A).
		4. Ligand: B3P × 5 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)- Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol PDB codes: 3d97(A), 3f8a(A), 3fa7(A), 3fel(A), 4qgw(A).
		5. Ligand: ACT × 4 Acetate ion PDB codes: 2fs6(A),
		6. Ligand: LSR × 4 1,3,3-Trimethyl-2-[(1e,3e)-3-Methylpenta-1,3-Dien-1- Yl]cyclohexene PDB codes: 3cr6(A), 3f8a(A), 3f9d(A), 3fa6(A).
		7. Ligand: LMC × 3 (2e,4e,6e)-3-Methyl-6-(1,3,3-Trimethyl-1,3-Dihydro-2h- Indol-2-Ylidene)hexa-2,4-Dienal PDB codes: 3fep(A), 4qgw(A), 4qgx(A).
_Na		8. Metal: _NA × 3 PDB codes: 2frs(A), 2g79(A).
		9. Ligand: 9U5 × 1 4-[2-(4,4-Dimethyl-1-Propan-2-Yl-Quinolin-6-Yl) ethynyl]benzoic acid PDB code: 5ogb(A).
		10. Ligand: AZE × 1 All-Trans axerophthene PDB code: 2g7b(A).
		11. Ligand: EDO × 1 1,2-Ethanediol PDB code: 6hkr(A).
		12. Ligand: G9Q × 1 4-[2-(4,4-Dimethyl-1-Propan-2-Yl-2,3-Dihydroquinolin-6- Yl)ethynyl]benzoic acid PDB code: 6hkr(A).
		13. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 3fep(A).
		14. Ligand: R12 × 1 (2e,4e,6e,8e)-9-(4-Hydroxy-2,3,6-Trimethylphenyl)-3,7- Dimethylnona-2,4,6,8-Tetraenoic acid PDB code: 3cbs(A).
		15. Ligand: R13 × 1 3-Methyl-7-(5,5,8,8-Tetramethyl-5,6,7,8-Tetrahydro- Naphthalen-2-Yl) -Octa-2,4,6-Trienoic acid PDB code: 2cbs(A).
		16. Ligand: RE9 × 1 6-(2,3,4,5,6,7-Hexahydro-2,4,4-Trimethyl-1- Metyleneinden-2-Yl)-3-Methylhexa-2,4-Dienoic acid PDB code: 1cbq(A).
		17. Ligand: YWZ × 1 4'-[(3,6,9,12-Tetraoxapentadec-14-Yn-1-Yl)oxy][1,1'- Biphenyl]-4-Yl sulfurofluoridate PDB code: 5hzq(A).
_Cl		18. Metal: _CL × 1 PDB code: 2fs7(A).

Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 6mqx(A),
		2. Ligand: ACT × 1 Acetate ion PDB code: 2fs7(A).
		3. Ligand: B3P × 1 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)- Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 3fel(A).

Cluster 3 contains 4 ligand types

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 6hkr(A), 6mpk(A).
		2. Ligand: ACT × 1 Acetate ion PDB code: 2fr3(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 2g79(A).
_Cl		4. Metal: _CL × 1 PDB code: 2fs7(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 6hkr(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6hkr(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 2 glycerin Glycerol PDB codes: 6mpk(A), 6mqy(A).