Ligand clusters for UniProt code P28472

Ligand clusters for P28472: Gamma-aminobutyric acid receptor subunit beta-3 from Homo sapiens

		Top 6 (of 12) ligand clusters Cluster 1. 4 ligand types 11 ligands Cluster 2. 2 ligand types 4 ligands Cluster 3. 3 ligand types 11 ligands Cluster 4. 3 ligand types 3 ligands Cluster 5. 3 ligand types 3 ligands Cluster 6. 4 ligand types 7 ligands
Representative protein: 4cofA

Structures

PDB		Schematic diagram
4cofA
5ojmA
5o8fA
6a96B
7a5vA
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 6 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 6a96(B), 6hug(B), 6huj(B), 6huk(B), 6huo(B), 6hup(B).
		2. Ligand: NAG-NAG-BMA-MAN-MAN × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 5ojm(A), 6i53(E), 7a5v(A).
		3. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 4cof(A).
		4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 5o8f(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 3 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB codes: 6huj(B), 6huk(B), 6hup(B).
		2. Ligand: NAG-NAG-BMA-MAN-MAN × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose, MAN=Alpha-D-Mannopyranose. PDB code: 6i53(E).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: NAG × 3 n-acetylglucosamine 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose PDB codes: 4cof(A), 5o8f(A), 5ojm(A).
		2. Ligand: NAG-NAG × 7 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose. PDB codes: 6hug(B), 6huj(B), 6huk(B), 6huo(B), 6hup(B), 6i53(E), 7a5v(A).
		3. Ligand: NAG-NAG-BMA × 1 NAG=2-Acetamido-2-Deoxy-Beta-D-Glucopyranose, BMA=Beta-D-Mannopyranose. PDB code: 6a96(B).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: DZP × 1 diazepam 7-Chloro-1-Methyl-5-Phenyl-1,3-Dihydro-2h-1,4- Benzodiazepin-2-One PDB code: 6hup(B).
		2. Ligand: OCT × 1 N-Octane PDB code: 7a5v(A).
		3. Ligand: POV × 1 (2s)-3-(Hexadecanoyloxy)-2-[(9z)-Octadec-9- Enoyloxy]propyl 2-(Trimethylammonio)ethyl phosphate PDB code: 6i53(E).

Cluster 5 contains 3 ligand types

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Ligand		Description
		1. Ligand: D10 × 1 Decane PDB code: 7a5v(A).
		2. Ligand: POV × 1 (2s)-3-(Hexadecanoyloxy)-2-[(9z)-Octadec-9- Enoyloxy]propyl 2-(Trimethylammonio)ethyl phosphate PDB code: 6i53(E).
		3. Ligand: R16 × 1 Hexadecane PDB code: 7a5v(A).

Cluster 6 contains 4 ligand types

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Ligand		Description
		1. Ligand: ABU × 4 gamma-aminobutyric acid Gamma-Amino-Butanoic acid PDB codes: 6a96(B), 6huj(B), 6huo(B), 6hup(B).
		2. Ligand: HSM × 1 histamine Histamine PDB code: 7a5v(A).
		3. Ligand: BEN × 1 Benzamidine PDB code: 4cof(A).
		4. Ligand: H0Z × 1 Bicuculline methochloride PDB code: 6huk(B).