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Ligand clusters for UniProt code P26839

Ligand clusters for P26839: Virginiamycin A acetyltransferase OS=Staphylococcus aureus GN=vat PE=1 SV=2

Top 6 (of 20) ligand clusters
Cluster 1.
6 ligand types
8 ligands
Cluster 2.
6 ligand types
8 ligands
Cluster 3.
2 ligand types
3 ligands
Cluster 4.
2 ligand types
4 ligands
Cluster 5.
2 ligand types
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4husA  
JSmol
 

Structures

PDB   Schematic diagram
4husA    
4myoA    
6x3cA    
6x3jA    
4hurA    

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: PEG × 2
Di(hydroxyethyl)ether
PDB codes: 4hus(A),


 
2. Ligand: SXA × 2
Thioacetic acid s-{2-[3-(2-Hydroxy-3,3-Dimethyl-4- Phosphonooxy-Butyrylamino)-Propionylamino]-
Ethyl} ester
PDB codes: 6x3c(A), 6x3j(A).


 
3. Ligand: ACO × 1
Acetyl coenzyme A
PDB code: 4hur(A).


 
4. Ligand: O7S × 1
(3r,4r,5e,10e,12e,14s,16r,26ar)-16-Fluoro-14-Hydroxy- 12-Methyl-3-(Propan-2-Yl)-4-(Prop-2-En-1-Yl)-
3,4,8,9, 14,15,16,17,24,25,26,26a-Dodecahydro-1h,7h,22h-21,18- (Azeno)pyrrolo[2,1-
C][1,8,4, 19]dioxadiazacyclotetracosine-1,7,22-Trione
PDB code: 6x3c(A).


 
5. Ligand: O7V × 1
(2r)-2-[(3s,4r,5e,10e,12e,14s,16r,26ar)-16-Fluoro-14- Hydroxy-4,12-Dimethyl-1,7,22-Trioxo-
4,7,8,9,14,15,16, 17,24,25,26,26a-Dodecahydro-1h,3h,22h-21,18-(Azeno) pyrrolo[2,1-
C][1,8,4,19]dioxadiazacyclotetracosin-3- Yl]propyl isoquinolin-3-Ylcarbamate
PDB code: 6x3j(A).


 
6. Ligand: VIR × 1
Virginiamycin m1
PDB code: 4hus(A).

 

 Cluster 2 contains 6 ligand types

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 4hus(A),


 
2. Ligand: SXA × 2
Thioacetic acid s-{2-[3-(2-Hydroxy-3,3-Dimethyl-4- Phosphonooxy-Butyrylamino)-Propionylamino]-
Ethyl} ester
PDB codes: 6x3c(A), 6x3j(A).


 
3. Ligand: ACO × 1
Acetyl coenzyme A
PDB code: 4hur(A).


 
4. Ligand: O7S × 1
(3r,4r,5e,10e,12e,14s,16r,26ar)-16-Fluoro-14-Hydroxy- 12-Methyl-3-(Propan-2-Yl)-4-(Prop-2-En-1-Yl)-
3,4,8,9, 14,15,16,17,24,25,26,26a-Dodecahydro-1h,7h,22h-21,18- (Azeno)pyrrolo[2,1-
C][1,8,4, 19]dioxadiazacyclotetracosine-1,7,22-Trione
PDB code: 6x3c(A).


 
5. Ligand: O7V × 1
(2r)-2-[(3s,4r,5e,10e,12e,14s,16r,26ar)-16-Fluoro-14- Hydroxy-4,12-Dimethyl-1,7,22-Trioxo-
4,7,8,9,14,15,16, 17,24,25,26,26a-Dodecahydro-1h,3h,22h-21,18-(Azeno) pyrrolo[2,1-
C][1,8,4,19]dioxadiazacyclotetracosin-3- Yl]propyl isoquinolin-3-Ylcarbamate
PDB code: 6x3j(A).


 
6. Ligand: PGE × 1
Triethylene glycol
PDB code: 4hus(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 2
Sulfate ion
PDB codes: 4hur(A), 4hus(A).


 
2. Ligand: PO4 × 1
Phosphate ion
PDB code: 6x3c(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: SO4 × 3
Sulfate ion
PDB codes: 4hur(A), 4hus(A), 6x3c(A).


 
2. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 4hur(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 4hur(A), 4hus(A).


 
2. Ligand: SO4 × 1
Sulfate ion
PDB code: 4hus(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: PEG × 1
Di(hydroxyethyl)ether
PDB code: 4hus(A).

 

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